Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_D18
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0149 + 989698-991797                                             31   0.68 
03_02_0583 + 9635002-9637299                                           29   2.7  
08_02_0416 + 16902153-16902430,16903089-16903143,16903174-169032...    27   8.3  

>05_01_0149 + 989698-991797
          Length = 699

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 4   RSMTNTGAAPGPLLERIAT*LVISY*LTTLAWQL 105
           RS TNTG  P   + R+ T +V  + L T+ W+L
Sbjct: 401 RSFTNTGRMPELFVMRLGTIMVTGFILATIFWRL 434


>03_02_0583 + 9635002-9637299
          Length = 765

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 4   RSMTNTGAAPGPLLERIAT*LVISY*LTTLAWQL 105
           R+ TNT   P   L R+AT +V ++ L T+ W+L
Sbjct: 466 RAFTNTRRTPELFLIRLATVVVTAFILATVFWRL 499


>08_02_0416 +
           16902153-16902430,16903089-16903143,16903174-16903232,
           16903565-16903655
          Length = 160

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 174 VDSDFSIRTKRQTCGVCKSSLRT 106
           V +  ++ T+ QTCG  K SLRT
Sbjct: 82  VATPHTVETQHQTCGAVKQSLRT 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,776,621
Number of Sequences: 37544
Number of extensions: 244188
Number of successful extensions: 513
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)