Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_D16
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    29   0.70 
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    28   1.2  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   2.1  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    27   2.8  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   3.7  
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    25   6.5  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    25   8.6  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    25   8.6  

>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +2

Query: 128 SGLNKTNTAFAFSSMN-----TSVSTIKSTMIEVPPNAESCKQGTY 250
           SG+N TN+  + S MN     TS+S +  T       A SCK   Y
Sbjct: 78  SGMNMTNSTTSMSGMNMSNSTTSMSGMNMTNTTTTAKASSCKLSMY 123



 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 119 SSDSGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAESCKQGTYLDNT 262
           +S SG+N TN+    S MN + ST   + + +  N+ +   G  + NT
Sbjct: 63  TSMSGMNMTNSTTPMSGMNMTNSTTSMSGMNM-SNSTTSMSGMNMTNT 109


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 9/41 (21%), Positives = 26/41 (63%)
 Frame = +2

Query: 134 LNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAESCKQGTYLD 256
           L+ +  ++A  ++++  S++ S++I+     +SC + TY++
Sbjct: 269 LDPSYQSYAAKTIHSDTSSLASSIIQTGDGTQSCDESTYIE 309


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 98  KDFKETFSSDSGLNKTNTAFAFSSMNTSV--STIKSTMIEVPPNAESCKQGTYLDNTG 265
           K FKE +   S   K NT  A  +  +    S IKS  +E P +A + K    +DN G
Sbjct: 540 KSFKEVYGKFSA-EKQNTDLAEDAKISEKLDSIIKSKELETPTSATTSKLMAPMDNIG 596


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 469 SLHDIISEVDRTSQFIKMKAFRIVFRDSSEDT 564
           SL +  +  DR  + ++  +F ++FRD SE+T
Sbjct: 719 SLVNAFAYCDRDKKNVRNCSFTVIFRDGSEET 750


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
 Frame = +2

Query: 17  IVFNLFICAYTAPFSVQDILDVFGSPIKDFKETFSSDSGL-NKTNTAF-AFSSMNTSVST 190
           IV  L +CA  APF++  + D+F   +K         SGL N+ +T +     +  S+S 
Sbjct: 75  IVELLRLCAPDAPFTLSQLEDIFQVILKIL-------SGLMNQESTYYPQIYEILESLSN 127

Query: 191 IKSTMIEVP-PNAE 229
           +KS ++ V  PNAE
Sbjct: 128 VKSAVLIVDLPNAE 141


>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = -3

Query: 337 FYLINFYFL--TFIFLLCLLPWYPAYSCVIQVCTLLA----TLRIRWYFNHSTLNCTN 182
           F +IN + L  TFI +     W+ AYS  I++   +      L + +   + +LNC N
Sbjct: 198 FQMINGFILIVTFICVRIAWGWFSAYSTAIEILNHINVAPWALSLFYLAANMSLNCLN 255


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -1

Query: 204 IVLLIVLTD--VFIELNANAVLVLFNPLSDENVSLKSF 97
           +++L+ +TD  +FI +  NA+LVLF  +  E   L  F
Sbjct: 105 LLVLVRMTDYWIFINILHNALLVLFPHVDTERRGLYRF 142


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 281 MVSCILLCYPSMYLA 237
           + SCIL C P +YLA
Sbjct: 30  IASCILFCCPGIYLA 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,226,968
Number of Sequences: 5004
Number of extensions: 41959
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)