Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_D14
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    27   1.1  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     26   1.4  
SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide...    25   4.3  
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   4.3  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    25   4.3  
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    25   4.3  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    24   7.5  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    23   9.8  

>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 156 ENVFNSTGAEWKIQKRLFTQNNIGQTKFYFECIHKVDNVLFIFV-ECITSSF 4
           E +F++      I  ++F +++I    F+  C H V N LF+F    IT+SF
Sbjct: 17  EVLFSAISFGISIYIKVFGRSSI--VTFFLLCFHLVPNALFLFPWTIITTSF 66


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = -2

Query: 128 NGRSRSDFSLKTILDKPSFILSV 60
           N R++++ SLK +  +PSF+L+V
Sbjct: 16  NTRTKAELSLKQLEKEPSFVLAV 38


>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
           synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 105 FTQNNIGQTKFYFECIHKVDNVLFIFVECITSSFD 1
           FT+   G+ +  +EC+   D++LF+  + I S++D
Sbjct: 12  FTKIATGKVRDLYECVEFPDDLLFVATDRI-SAYD 45


>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 128

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 146 LTAPAR-NGRSRSDFSLKTILDKPSFILSVSIKSITFFSYLS 24
           +T P R NG S   F+L T    PS+ LS +      F Y+S
Sbjct: 1   MTGPFRYNGGSVRSFALTTNFSFPSYDLSFNETEHGVFCYVS 42


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 285 LELRCHRHY*HRHTQIFQQRFEYNTANKF 199
           L++R H      HT I+   F+ N+ NKF
Sbjct: 6   LQIRWHYDANDDHTPIYSVDFQKNSLNKF 34


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 149 CLTAPARNGRSRSDFSLKTILDKPSFI--LSVSIKSI 45
           CLT P      +SDFSL+   D       ++V+IKSI
Sbjct: 377 CLTVPTPPSYVKSDFSLEDGTDAALICEGINVNIKSI 413


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 122  RSRSDFSLKTILDKPSFILSVSIKSITFFSYLSNVSHPVL 3
            R+++ +SL        FI  ++ +   F +YL   SHP+L
Sbjct: 2266 RNKTRWSLVIAEPYNDFIAEIAPEGEEFLTYLRKHSHPML 2305


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +1

Query: 16  DTFDKYEKNVIDFMDTLKIKLGLSNIVLSEKSLLDLPFRAGAVKHVLLTVSE 171
           D     +K  +DFMD+L  KL      + E S  ++      ++ +   V E
Sbjct: 274 DDLSNQQKQQLDFMDSLNKKLSTELESIKEASRKEMETHCATIQTLENEVKE 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,399,720
Number of Sequences: 5004
Number of extensions: 23188
Number of successful extensions: 65
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)