Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_D14
         (342 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0623 - 18109311-18109853,18109900-18110495,18111292-181114...    27   5.1  
04_03_0618 - 18071612-18072795,18073007-18073072,18074101-180741...    27   5.1  
05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635     26   8.9  

>04_03_0623 -
           18109311-18109853,18109900-18110495,18111292-18111493,
           18111616-18111814,18112091-18112191
          Length = 546

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -2

Query: 119 SRSDFSLKTILDKPSFILSVSIKSITFFSYLSNVSHPVL 3
           S++D S++T+       L V+ +S   FSYL ++ HP+L
Sbjct: 329 SQNDPSIRTL----EIRLKVAAESAEAFSYLHSLDHPIL 363


>04_03_0618 -
           18071612-18072795,18073007-18073072,18074101-18074175,
           18074234-18074963
          Length = 684

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -2

Query: 119 SRSDFSLKTILDKPSFILSVSIKSITFFSYLSNVSHPVL 3
           S++D S++T+       L V+ +S   FSYL ++ HP+L
Sbjct: 452 SQNDPSIRTL----EIRLKVAAESAEAFSYLHSLDHPIL 486


>05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635
          Length = 819

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 174 RLRHCQENVFNSTGAEWKIQKRLFTQNNIGQTKFYF 67
           R+R C E +  S  A W++Q  + T+  +  T+  F
Sbjct: 318 RMRQCMEELHRSVTAAWQLQ-TVLTKKRVPFTQMLF 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,751,203
Number of Sequences: 37544
Number of extensions: 139364
Number of successful extensions: 364
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)