Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_D12
(394 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 122 2e-29
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 69 3e-13
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 69 3e-13
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 66 2e-12
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 64 1e-11
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 59 3e-10
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 50 1e-07
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 46 3e-06
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 44 8e-06
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 41 8e-05
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 41 8e-05
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 38 7e-04
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 35 0.004
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 35 0.005
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.26
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 29 0.26
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 27 1.0
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 27 1.4
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 2.4
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 25 3.2
SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 5.5
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ... 24 7.3
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|... 24 7.3
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 122 bits (295), Expect = 2e-29
Identities = 56/59 (94%), Positives = 57/59 (96%)
Frame = +2
Query: 218 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 394
M TIKCVVVGDGAVGKTCLLISYTTNKFPS+YVPTVFDNYAVTVMIG EPYTLGLFDTA
Sbjct: 1 MPTIKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTA 59
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 68.9 bits (161), Expect = 3e-13
Identities = 31/55 (56%), Positives = 37/55 (67%)
Frame = +2
Query: 230 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 394
K V+VGDGA GKTCLLI ++ FP YVPTVF+NY V + G L L+DTA
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTA 62
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 68.9 bits (161), Expect = 3e-13
Identities = 31/55 (56%), Positives = 37/55 (67%)
Frame = +2
Query: 230 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 394
K V+VGDGA GKTCLLI ++ FP YVPTVF+NY V + G L L+DTA
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTA 62
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 65.7 bits (153), Expect = 2e-12
Identities = 31/55 (56%), Positives = 37/55 (67%)
Frame = +2
Query: 230 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 394
K VVVGDGA GKT LL +T FP+EYVPTVF+NY + G+ L L+DTA
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTA 64
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 63.7 bits (148), Expect = 1e-11
Identities = 33/64 (51%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Frame = +2
Query: 212 SKMQTIK-CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIG--GEPYTLGL 382
SK +T K VVVGDG GKTCLLI +++ FP YVPTVF+NY + G + L L
Sbjct: 9 SKSETSKKLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELAL 68
Query: 383 FDTA 394
+DTA
Sbjct: 69 WDTA 72
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 58.8 bits (136), Expect = 3e-10
Identities = 26/55 (47%), Positives = 34/55 (61%)
Frame = +2
Query: 230 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 394
K V++GDGA GKT LL +T FP Y PT+F+NY + + G L L+DTA
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTA 69
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 50.4 bits (115), Expect = 1e-07
Identities = 26/59 (44%), Positives = 33/59 (55%)
Frame = +2
Query: 218 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 394
++ K VVVGDG VGK+ L I + F EY PT+ D+Y I GE L + DTA
Sbjct: 6 LREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTA 64
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 45.6 bits (103), Expect = 3e-06
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 227 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 394
+K V++GD VGKTCL+ + KF EY T+ D V++ + TL L+DTA
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTA 65
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 44.0 bits (99), Expect = 8e-06
Identities = 18/57 (31%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = +2
Query: 227 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTA 394
IK +++GD VGK+CLL+ ++ + F ++ T+ ++ + T+ + G+ L ++DTA
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTA 66
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 40.7 bits (91), Expect = 8e-05
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 230 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 394
+ V+G +VGK+ L + Y N F Y PT+ + ++ + G+ + + DTA
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTA 62
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 40.7 bits (91), Expect = 8e-05
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +2
Query: 230 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTA 394
K +++GD VGK+CLL+ + + + Y+ T+ ++ + T + G+ L ++DTA
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTA 65
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 37.5 bits (83), Expect = 7e-04
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 224 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFD 388
TIK ++GD ++GKT L+++Y F E T+ N+ T+ I T ++D
Sbjct: 10 TIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWD 65
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 35.1 bits (77), Expect = 0.004
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +2
Query: 230 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTA 394
K V++GD VGK+ LL+ +T N+F E T+ +A +++ + ++DTA
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTA 67
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 34.7 bits (76), Expect = 0.005
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 224 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 325
T K V+VGDG GKT + + T +F +Y+ T+
Sbjct: 9 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATL 42
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.1 bits (62), Expect = 0.26
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 233 CVVVGDGAVGKTCLL 277
C++VGD A GKTC+L
Sbjct: 1872 CILVGDTATGKTCIL 1886
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 29.1 bits (62), Expect = 0.26
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = +2
Query: 227 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEP--YTLGLFDT 391
+K V+ G GK+CLL + N++ + TV F + ++V +G + L ++DT
Sbjct: 10 VKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDT 69
Query: 392 A 394
A
Sbjct: 70 A 70
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 27.1 bits (57), Expect = 1.0
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 230 KCVVVGDGAVGKTCLLISYTTNKF 301
K V++GD AVGK+ L++ + ++F
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQF 39
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 26.6 bits (56), Expect = 1.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 63 FNFYSQVLYCFIFTIYFRGLFPAEVAMVSKL 155
+NF+S V YCF+ + F V M S L
Sbjct: 72 WNFFSVVTYCFVLFLQFAEQSTLRVPMASLL 102
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 2.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 233 CVVVGDGAVGKTCLLISYTTN 295
C VVG + GKT LL S+ N
Sbjct: 424 CFVVGSKSCGKTALLSSFINN 444
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 25.4 bits (53), Expect = 3.2
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +2
Query: 227 IKCVVVGDGAVGKTCLLISY----TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 391
I +VVG+ ++GKT + S+ TN P + + F + T+ G + + L + DT
Sbjct: 119 INLIVVGESSLGKTTFVNSFLQSNDTNFRPKKTMD--FVEHKATLSDGDQKFNLTIVDT 175
>SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 121
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = -1
Query: 331 IKHCWHIL*WKFVGCIANK*ACFTNRTISYHNTLNC 224
+K+C+ IL W+ V + R I +N C
Sbjct: 70 LKNCFRILEWEIVSHVGGNELLINRRVIDVNNFFIC 105
>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 343
Score = 24.2 bits (50), Expect = 7.3
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 43 RKVQFIILIFIPKF-YIVLYLQYILEACSLPRLLWSASCVKQQE 171
++V+ L F+ +F Y ++Y L + L W A C+ Q +
Sbjct: 289 KEVELNKLAFLQQFHYGIVYAFLKLREQEIRNLTWIAECISQNQ 332
>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 24.2 bits (50), Expect = 7.3
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 290 TNKFP-SEYVPTVFDNYAVTVMIGGEPYTLGL 382
T FP +EY T ++ T +IGG+ Y LG+
Sbjct: 299 TYNFPVTEYKGTKTIMFSTTSVIGGKNYFLGI 330
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,600,113
Number of Sequences: 5004
Number of extensions: 30385
Number of successful extensions: 84
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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