Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_D11
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0237 + 21184480-21184809                                         57   9e-09
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323...    27   6.2  
08_02_0266 + 15051868-15052286,15052376-15052475,15053540-150535...    27   8.2  

>02_04_0237 + 21184480-21184809
          Length = 109

 Score = 56.8 bits (131), Expect = 9e-09
 Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
 Frame = +3

Query: 183 VTVKLLFFARSKELAGTRESTIQLPKKISYHQLL-NIISENYNLGTIKNNILLAKNEEVC 359
           V VK+LFFAR+++L G  E+ +++P   +    L  +++    L  I+ +++LA NEE  
Sbjct: 29  VKVKVLFFARARDLTGVTEAPVEVPAGSTAGDCLARVLAAFPRLEEIRRSMVLALNEEYA 88

Query: 360 EENFDIEIKEKDSIAVIPPLSGG 428
            E  D  + + D +A+IPP+SGG
Sbjct: 89  PE--DAAVGDGDELAIIPPISGG 109


>02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,
            3238937-3239151,3239569-3240031,3240562-3240715,
            3241724-3241833,3242540-3242797,3242843-3242854,
            3243492-3243545,3244202-3244312,3244390-3244545,
            3244798-3245201,3245405-3245501,3246041-3246050,
            3246097-3246164,3246652-3246762,3246874-3247074,
            3247384-3247485,3247980-3248087,3248209-3248411,
            3248563-3248680,3248774-3248854,3248958-3249500,
            3249602-3249730
          Length = 1428

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 109  TIILHLYHLLK*TMGTYEIWKLVIMLQ*SYYSLHAPKNWPEQGNLQYSFLRK*A-TINC 282
            T+ILHL  +        E  K+  ML+ S+   HA KN PE+  L    LR+   TI C
Sbjct: 910  TMILHLLRV--------EELKVEDMLKRSFAEFHAQKNLPEKEKLLLQMLRQPTKTIEC 960


>08_02_0266 +
           15051868-15052286,15052376-15052475,15053540-15053581,
           15053734-15053930,15055412-15055508,15055604-15055699,
           15056395-15056633,15056728-15056811,15056898-15057185,
           15057658-15057718,15061093-15061362,15061663-15061722
          Length = 650

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +3

Query: 240 STIQLPKKISYHQLLNIISENYNLGTIKNNILLA--KNEEVCEENFDIEIK 386
           S  Q+   +  H+L++I  +  +LGT ++ ++ A  K++E  E+ F++  K
Sbjct: 509 SNKQMDHNLLEHELVSIAGKGGSLGTYEDIVIQANTKSQESYEDQFNVSKK 559


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,825,398
Number of Sequences: 37544
Number of extensions: 170111
Number of successful extensions: 306
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)