Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_D10
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    27   1.4  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    27   1.9  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    27   2.5  
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.3  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   5.7  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    25   7.5  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   7.5  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   10.0 
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual    25   10.0 

>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 501 ILLMALQQVSLVWHAAGM*EWWITTYGTGVFRGKVWFGCLALHC 370
           I L + +Q  ++W  +   E W+     GV     WF CL L C
Sbjct: 329 IYLTSSRQAFVLWVYSLDKELWLQLDMLGVLNHGSWFKCLVLDC 372


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 308  FSGESVENEVPSYDFPFVSRSQWSARQPN 394
            FS   + ++VP ++F F+SR+ W+A   N
Sbjct: 1006 FSINDILSQVPVFEFIFLSRNFWTASLGN 1034


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 290 KAYPSIFSGESVENEVPSYDFP-FVSRSQWSARQPNQTL 403
           + Y    SG+SVE E P   FP   +R+ W   + +Q+L
Sbjct: 38  QVYRCPISGKSVEYECPESGFPTHCNRTHWEQDKIHQSL 76


>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 252 NILNIITFNTIHKTRLLQYFLN 187
           N+L++ TFN + K RL QY L+
Sbjct: 102 NVLSLNTFNILGKKRLSQYTLD 123


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +2

Query: 320 SVENEVPSYDFPFVSRSQWSARQPNQTLPLKTPVPYVVIHHSYIPAACHTRETCCKAMRS 499
           S ++     D PF   +Q  +  PN+     +P+ Y V  HS   A+  + E   ++MRS
Sbjct: 320 SFQSSYNDADRPFQVGAQTQST-PNRISRSDSPIVYDVDTHSEDNASTASSEAISQSMRS 378

Query: 500 MQ 505
            Q
Sbjct: 379 FQ 380


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 374 WSARQPNQTLPLKTPVPYVVIHHSYIPAACHTRETCCKA 490
           W  R+P   L    PVPY  +  SY   +    +TC  A
Sbjct: 7   WKPREPKNALTCDPPVPY-DLQSSYQWQSILEHDTCYAA 44


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 390 GCLALHCERLTKGKSYDGTSFSTDSPEKIDGYAFTFIIIVTNNPIDNI-LNIITFNT 223
           G   LH +RLT    ++  +  ++SP  +     TF  +    P++++   I T NT
Sbjct: 743 GSQGLHYKRLTTDMIHNLFNVPSNSPVNMQAIYNTFSKMAVGEPMESLGTQIATLNT 799


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +2

Query: 35  DKSYKQRSDFDKSIYYV*IHVLGYINLIKTIFVSSVVDVKSVIESAAALLLFKKYCNNRV 214
           D +Y++ SD    ++     +L Y+ L   IF + VVDVK   E  +  LLF  +    +
Sbjct: 13  DFTYRECSDVANDVFKKTQWLL-YVFLF-IIFANCVVDVKYYFEGFSHSLLFVYFFLTLI 70

Query: 215 LCIV 226
           + +V
Sbjct: 71  ILLV 74


>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 378 VRGNQTRPCL*KLQYRMWLSTTLTYQRHATLERLAVK 488
           +R N     L KL  + W+S+T+T ++     RLA++
Sbjct: 51  IRPNDYNSRLCKLPSKSWVSSTVTNEKLRESRRLALQ 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,027
Number of Sequences: 5004
Number of extensions: 51892
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)