Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_D10
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0505 + 21545547-21545813,21546075-21546167,21546535-215467...    31   0.82 
09_06_0081 + 20745627-20748144,20748211-20748308                       29   2.5  
02_05_0979 + 33268294-33269595                                         29   3.3  
07_01_0142 + 1054495-1054644,1054767-1055971,1056102-1056180,105...    28   5.8  
09_04_0584 - 18714461-18716296                                         27   7.7  
09_04_0440 - 17605405-17605476,17605558-17605629,17606014-176062...    27   7.7  
04_01_0476 + 6215401-6217445,6217538-6217630,6218031-6218133,621...    27   7.7  

>06_03_0505 +
           21545547-21545813,21546075-21546167,21546535-21546747,
           21548933-21549124,21549217-21550197
          Length = 581

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = +2

Query: 425 YVVIHHSYIPAACHTRETCCKAMRSMQNFHMDGHQWWDIGYHFG 556
           YV+ H++ +           + +  +  +H+ GH +W +GY  G
Sbjct: 445 YVLAHNATVDVVLQNANALARNVSEVHPWHLHGHDFWVLGYGDG 488



 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 465 WHAAGM*EWWITTYGTGVFRG 403
           WH  G  ++W+  YG G FRG
Sbjct: 473 WHLHGH-DFWVLGYGDGAFRG 492


>09_06_0081 + 20745627-20748144,20748211-20748308
          Length = 871

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 341 SYDFPFVSRSQWSARQPNQTLPLKTPVPYVVIHHSYIP 454
           S+D+  VS S  +   P  +L L++P P++ + H   P
Sbjct: 472 SFDYDGVSSSSSTPHVPTTSLALRSPAPHLRVRHMPAP 509


>02_05_0979 + 33268294-33269595
          Length = 433

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -2

Query: 535 PPLMTVHMEVLHTPHGFTASLSSVACRWYV--RVVDNHIRY-WSFQRQGLVWLPRT 377
           PP+  + M   H PHG    L+S +C   V  ++  +H  Y W+   + ++ LP T
Sbjct: 102 PPVEEI-MTARHLPHGTIFPLASKSCHGLVLLKITGHHTHYLWNPSTRHILRLPGT 156


>07_01_0142 +
           1054495-1054644,1054767-1055971,1056102-1056180,
           1056619-1056822
          Length = 545

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 500 MQNFHMDGHQWWDIGYHFG 556
           +Q++H+DG+ +W +GY  G
Sbjct: 438 LQSWHLDGYDFWVVGYGNG 456


>09_04_0584 - 18714461-18716296
          Length = 611

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +2

Query: 269 VTIIMNVKAYPSIFSGESVENEVPSYD--FPFVSRSQWSARQPN-QTLPLKTPVPYVVIH 439
           V+I M  +A P     ES +N  P     FP  S S ++    + QT+P K P+P  ++ 
Sbjct: 470 VSICMRGQAVPY----ESSDNSRPKTGNIFPQDSDSGFNNMPSSYQTIPPKQPLPLSIME 525

Query: 440 HSYIPAACHT 469
           H  +P    T
Sbjct: 526 HHVVPLGIRT 535


>09_04_0440 -
           17605405-17605476,17605558-17605629,17606014-17606277,
           17607106-17607510
          Length = 270

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +1

Query: 382 EATKPDLASENSSTVCGYPPLLHTSGMPH*RDLL*SHEEYAELPYGRSSMVGYWI 546
           E+   +++S N +  CG P  L T+ M      L S   Y  L YG S++V  WI
Sbjct: 163 ESISSNVSSINDALYCGSP--LQTTLMQ-----LDSENSYTALVYGTSALVTIWI 210


>04_01_0476 +
           6215401-6217445,6217538-6217630,6218031-6218133,
           6218237-6218254
          Length = 752

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 89  FIRNKCSYQNHYVVYMIYHGFGDS 18
           FIR   + ++HYVV+ + H F +S
Sbjct: 522 FIRKVANIEDHYVVHDLLHDFAES 545


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,459,909
Number of Sequences: 37544
Number of extensions: 311201
Number of successful extensions: 763
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)