Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_D09
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   3.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   4.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.1  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   7.1  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 417 NNTLKNNQQFH*WSKNDHYNVL 352
           N T+ NN  +  ++K  +YN++
Sbjct: 320 NKTIHNNNNYKNYNKKLYYNII 341


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 562 SPVYTC*HLTLFFLRLESRRPYPVA 488
           SP+    + TLFF  L SRR + V+
Sbjct: 264 SPIAVNGYRTLFFHPLSSRREFAVS 288


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 317 PKKNYTNCGTDF 282
           P+ N T CGTD+
Sbjct: 195 PEGNMTACGTDY 206


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 317 PKKNYTNCGTDF 282
           P+ N T CGTD+
Sbjct: 71  PEGNMTACGTDY 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,132
Number of Sequences: 438
Number of extensions: 2554
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)