Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_D08
(497 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 235 2e-63
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 235 2e-63
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 47 2e-06
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 27 1.2
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 6.3
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.4
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 8.4
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 25 8.4
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 235 bits (576), Expect = 2e-63
Identities = 116/141 (82%), Positives = 129/141 (91%)
Frame = -2
Query: 496 AQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPRE 317
A+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+ GPRE
Sbjct: 63 ARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPRE 122
Query: 316 DSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKG 137
DSTRIG AGTVRRQAVDVSPLRRVNQA+ L+ GAREAAFRN+K+I+EC+A+E+INAAKG
Sbjct: 123 DSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKG 182
Query: 136 SSNSYAIKKKDELERVAKSNR 74
SSNSYAIKKKDELERVAKSNR
Sbjct: 183 SSNSYAIKKKDELERVAKSNR 203
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 235 bits (576), Expect = 2e-63
Identities = 116/141 (82%), Positives = 129/141 (91%)
Frame = -2
Query: 496 AQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPRE 317
A+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+ GPRE
Sbjct: 63 ARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPRE 122
Query: 316 DSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKG 137
DSTRIG AGTVRRQAVDVSPLRRVNQA+ L+ GAREAAFRN+K+I+EC+A+E+INAAKG
Sbjct: 123 DSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKG 182
Query: 136 SSNSYAIKKKDELERVAKSNR 74
SSNSYAIKKKDELERVAKSNR
Sbjct: 183 SSNSYAIKKKDELERVAKSNR 203
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 46.8 bits (106), Expect = 2e-06
Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Frame = -2
Query: 481 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 302
V+ L N +M +GKK A +IV A II TGENP+ VL AI P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISPLMKLVSA 181
Query: 301 GRAGTVRRQAVDVSPLRRVNQAI-WLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 125
R + + +R A+ W+L E + K +++ + E+I +SN
Sbjct: 182 KRFNKSVEFPMPLKERQRRRIALQWIL----GECKSSSPKRLSDRIVKEIIAIRSKTSNC 237
Query: 124 YAIKKKDELERVAKSNR 74
+ KKKD L R+ NR
Sbjct: 238 F--KKKDHLHRMCLVNR 252
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 1.2
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -2
Query: 400 AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRR 248
+ +I HL+TG N + T ++N R D R+ R+ + Q+ D SP +R
Sbjct: 159 SLDIHHLVTGHNADDIAETILMNL-LRGDVARLPRSTEITTQS-DSSPTKR 207
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 160 ELINAAKGSSNSYAIKKKDELER 92
E +N+ + NS ++KKDELE+
Sbjct: 133 EKLNSEISNQNSLILQKKDELEK 155
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 24.6 bits (51), Expect = 8.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 261 PHYVVLTRLSGYCAQEH 211
PH+ V+TR+ YC H
Sbjct: 1435 PHWQVITRIPQYCHDTH 1451
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 394 EIIHLLTGENPLQVLVTAIINSGPREDSTR 305
EI +LTGENP ++ AI+ R + R
Sbjct: 1034 EIFLMLTGENPEELQADAIVPVNVRRVTNR 1063
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 8.4
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = +3
Query: 177 AIVLMFLNAASRAPVHNNQIAWLTRRNGDTSTA*RRTVPARPILVESSLGPELIIAVTRT 356
A +L + ++ R+ H ++ L N T++ +R +PA + S+ +L +
Sbjct: 391 AKLLDLVKSSYRSSFHTKKMTSLFTHNNHTTSNIQREIPASDSIAWHSISKKLGTKSPES 450
Query: 357 CR 362
CR
Sbjct: 451 CR 452
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,889,329
Number of Sequences: 5004
Number of extensions: 36985
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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