Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_D07
(385 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc... 108 3e-25
SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi... 107 4e-25
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 23 1.5
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 25 3.1
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 25 4.1
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 25 4.1
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 25 4.1
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 24 7.1
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 24 9.4
>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 148
Score = 108 bits (260), Expect = 3e-25
Identities = 53/125 (42%), Positives = 69/125 (55%)
Frame = +1
Query: 7 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 186
M T KTRKLRGHVS AGG H R + DKYHPGYFGK+GMR
Sbjct: 1 MPTHVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60
Query: 187 YHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXXPKQ 366
+H+ +N + P +NLD+LWTL+ +AR KY PVIN++++ P+
Sbjct: 61 FHLMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPET 120
Query: 367 PVIVK 381
PVIV+
Sbjct: 121 PVIVQ 125
>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
27a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 107 bits (258), Expect = 4e-25
Identities = 52/125 (41%), Positives = 67/125 (53%)
Frame = +1
Query: 7 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 186
M T KTRKLRGHVS AGG H R + DKYHPGYFGK+GMR
Sbjct: 1 MPTHTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60
Query: 187 YHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXXPKQ 366
+H+ +N + P +NLD+LWTLV + R KY PVIN++++ P
Sbjct: 61 FHLMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDT 120
Query: 367 PVIVK 381
PVI++
Sbjct: 121 PVIIQ 125
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 22.6 bits (46), Expect(2) = 1.5
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -1
Query: 118 HHQHYHVHQD 89
HH H+H H D
Sbjct: 305 HHHHHHSHDD 314
Score = 22.2 bits (45), Expect(2) = 1.5
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = -1
Query: 127 DGAHHQHYHVH 95
+G HH H+H H
Sbjct: 297 EGHHHHHHHHH 307
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 25.4 bits (53), Expect = 3.1
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = +1
Query: 178 MRNYHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVI 309
+ NY ++ FCP L D + + KY A K+ V+
Sbjct: 120 IENYVLKHGGTFCPDLTRDVTHLIAGTSSGRKYEYALKWKINVV 163
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 25.0 bits (52), Expect = 4.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 178 MRNYHMRRNKDFCPVLNLDKLWTLVSEQARL 270
M NY +R D +LNL K W + AR+
Sbjct: 36 MDNYVWKRRSDGVHILNLGKTWEKLVLAARV 66
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 25.0 bits (52), Expect = 4.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 178 MRNYHMRRNKDFCPVLNLDKLWTLVSEQARL 270
M NY +R D ++NL K W + AR+
Sbjct: 37 MENYVWKRRSDGIHIINLGKTWEKLVLAARV 67
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 25.0 bits (52), Expect = 4.1
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Frame = -1
Query: 283 QMHTLVLPAQRPESTVCQDLK--QGRNPCFFSCGNFSYQVCQSTQGGTCPC*FCDGAHHQ 110
++H + RP+ V + +GR+ G + + QGG +G HH
Sbjct: 688 KLHFVQKDESRPKEPVVDAAQKHEGRSETLAQPGQQNANQSEEKQGGQNGS---NGGHHH 744
Query: 109 HYHVH 95
H+H H
Sbjct: 745 HHHHH 749
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 24.2 bits (50), Expect = 7.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 303 RHLAICGRCIL*SCLLRDQSPQ 238
RH +CGR I C+L PQ
Sbjct: 295 RHCRLCGRVICRFCVLEISLPQ 316
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 23.8 bits (49), Expect = 9.4
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +3
Query: 3 KYGHLQEEDQEVERTREPW 59
KYG +E + + E R PW
Sbjct: 87 KYGRKEEGESQEESKRSPW 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,367,184
Number of Sequences: 5004
Number of extensions: 24717
Number of successful extensions: 60
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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