Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_D06
         (438 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.              30   4.0  
D87436-1|BAA13380.2|  902|Homo sapiens KIAA0249 protein.               29   9.3  

>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
          Length = 1349

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 24/104 (23%), Positives = 41/104 (39%)
 Frame = +3

Query: 3   TTITTTSQRRLSPPEICQISLMYPTSTLSVAE*TICSKIRLVHQRPPLTRTSSIVTITPW 182
           T+ T+T Q  +S       +    +ST+S    +I S         P T T+S  T T  
Sbjct: 372 TSTTSTPQTSISSAPTSSTTSAPTSSTISARTTSIISAPTTSTTSSPTTSTTSATT-TST 430

Query: 183 TES*TSSRVLTPRSISTXXXXXXXXXXXXXXGNLTSDSHSLNIS 314
           T + TSS   TP++  T               +  + + + ++S
Sbjct: 431 TSAPTSSTTSTPQTSKTSAATSSTTSSSGTTPSPVTTTSTASVS 474


>D87436-1|BAA13380.2|  902|Homo sapiens KIAA0249 protein.
          Length = 902

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -1

Query: 285 LGSQEDFMKGVSNFLKPALKSTEVSGLLKRFSFPSRE*SLRLMKSV*AAVADAP 124
           LG+Q      V+  L+P L+ST++S +L     P+   +    +S  AA  D+P
Sbjct: 338 LGTQMSDPTSVAELLEPPLESTQISSMLDADHLPNAALAEAPSESKPAAKVDSP 391


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,091,473
Number of Sequences: 237096
Number of extensions: 1037597
Number of successful extensions: 1992
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1989
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)