Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_D05
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    64   2e-11
SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.55 
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   0.95 
SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase |Schizos...    26   3.8  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    25   6.7  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   8.9  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   8.9  

>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
 Frame = +3

Query: 129 TVPEAGYFIVADWTKLANKIDLSSEPD---KYRDYKFTKKFAKEAGVLTIPPTAFYSEEH 299
           T+P+  Y+ +A+++KL    D     +   + RD+K      KE GV TIPPT FY++E 
Sbjct: 329 TIPDGSYYTMANFSKLKLPKDYPFPEEIANRPRDFKLCYWILKEIGVATIPPTEFYTDED 388

Query: 300 KHLGENFARFCFIKKDENLDLTAKLLKEWND 392
             + EN+ RF F K  E L+  A+ L++  D
Sbjct: 389 APVAENYLRFAFCKTFETLEEAARRLQKLKD 419


>SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 277 PHSIRRSINTSERTLPGSASSRKTKTW 357
           P SIRR + +S R L     SRK K W
Sbjct: 80  PESIRRILKSSNRPLDDREKSRKEKRW 106


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +1

Query: 133 YPRPVTLS*PIGLNSRTR-LIYHRNRINIEITSSRRSLRRKPAY-SRYRRPHSIRRSINT 306
           +P  VT + P  ++++++   YH       ++S        PAY     +  S  +++ +
Sbjct: 500 HPHAVTTNEPTDVSTKSKSAAYHYPATTETVSSKAARSATTPAYVGGATKTPSTTKAVES 559

Query: 307 SERTLPGSASSRKTKTWT 360
           +  TLP SAS+    T T
Sbjct: 560 TPSTLPTSASTNAAATTT 577


>SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 99  PLESLSWAVTRVPASRNSNRTS*YAIVRIRTTS 1
           PL+ L W V  +P    SN    Y IV+ RT S
Sbjct: 27  PLQLLGWDVDAIPTVELSNHAG-YPIVKGRTLS 58


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 272 RYREYAGFLRKLLRELV 222
           RYR   GFL  LLREL+
Sbjct: 263 RYRTVLGFLTMLLRELI 279


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 358  SKFSSFLMKQNLAKFSPRCLCSSE*NAVGGIVS 260
            SKF +F +    +   P+ L ++E  A+G IVS
Sbjct: 920  SKFQNFPITNTNSFLEPKMLFATEIGAIGSIVS 952


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 270  PPTAFYSEEHKHLGENFARFCFIKKDENLDLTAKLLKE 383
            PP     ++   LG+NF + CF+         A+LL +
Sbjct: 1366 PPIIPADDQLSPLGQNFLKRCFVSDPNQRATAAELLMD 1403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,274,581
Number of Sequences: 5004
Number of extensions: 42342
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)