Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_D05
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591 55 4e-08
10_08_0422 - 17796916-17797167,17797328-17797453,17797546-177977... 41 7e-04
02_02_0578 + 11745811-11746013,11749902-11750241,11750325-117505... 32 0.32
10_05_0047 + 8524345-8524414,8524687-8524776,8525004-8525306,852... 31 0.98
10_08_0002 - 13986969-13989338 29 2.3
03_04_0071 + 17048222-17048227,17048348-17048601,17048679-17048940 28 5.2
12_01_0708 - 6137865-6140909 28 6.9
01_05_0080 - 17957276-17957676,17957810-17957921,17958001-179581... 28 6.9
08_02_1140 + 24649869-24651029 27 9.2
06_02_0263 - 13566621-13569875 27 9.2
05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-23... 27 9.2
>09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591
Length = 455
Score = 55.2 bits (127), Expect = 4e-08
Identities = 39/123 (31%), Positives = 54/123 (43%)
Frame = +3
Query: 30 INSSDCYFYSLARELLPKRDSLVETLKDNGFNPTVPEAGYFIVADWTKLANKIDLSSEPD 209
+ + D Y+ L R+ K+ LV LKD GF YF++ D T D
Sbjct: 345 LRAPDSYYEELRRDYGAKKALLVNGLKDAGFIVYPSSGTYFVMVDHTPFG--FD------ 396
Query: 210 KYRDYKFTKKFAKEAGVLTIPPTAFYSEEHKHLGENFARFCFIKKDENLDLTAKLLKEWN 389
D +F + +E GV+ IPP+ FY G+N RF F K DE L + +K
Sbjct: 397 --NDIEFCEYLIREVGVVAIPPSVFYLNPED--GKNLVRFTFCKDDETLRAAVERMKTKL 452
Query: 390 DKK 398
KK
Sbjct: 453 RKK 455
>10_08_0422 -
17796916-17797167,17797328-17797453,17797546-17797700,
17797793-17797907,17798022-17798118,17798274-17798368,
17798500-17798585,17798689-17798819,17798909-17799090
Length = 412
Score = 41.1 bits (92), Expect = 7e-04
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
Frame = +3
Query: 12 EYELSRINSSDCYFYSLARELLPKRDSLVETLKDNGFNPTVPEAGYFIVADWTKLANKID 191
E L + S ++ SL ++ +RD +++ L D GF + G V + +L
Sbjct: 269 EAALVALTSPPDFYSSLKQDYTARRDFILQVLTDFGFRISFKPQGSIFV--FVELPRSWQ 326
Query: 192 LSSEPDKYRDYKFTKKFAKEAGVLTIPPTAFY--SEEHKHLGENFARFCFIKKDENLDLT 365
LS D F K AGV +P F+ S + + RF F K ++ L+
Sbjct: 327 LS-------DMDFVTNLIKNAGVAAVPGRGFFHSSTDDPSYHHRYVRFAFCKSNDTLNAA 379
Query: 366 AKLLKE 383
A+ +++
Sbjct: 380 AEKMRK 385
>02_02_0578 +
11745811-11746013,11749902-11750241,11750325-11750543,
11751043-11751102,11751262-11751417,11751518-11751611,
11751914-11751927
Length = 361
Score = 32.3 bits (70), Expect = 0.32
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +3
Query: 33 NSSDCYFYSLARELLPKRDSLVETLKD-NGFN-PTVPEAGYFIVADWTKLANKIDLSSEP 206
N+ + YF + +L D + +KD G P PE F++ K+DLS
Sbjct: 283 NTKEDYFNKILDQLRNAADLCYDKIKDIKGITCPHKPEGSMFVMV-------KLDLSYLD 335
Query: 207 DKYRDYKFTKKFAKEAGVLTIPPTAF 284
+ D F + AKE V+ +P T++
Sbjct: 336 GFHDDMDFCCRLAKEESVIVLPETSW 361
>10_05_0047 +
8524345-8524414,8524687-8524776,8525004-8525306,
8525413-8525872,8525962-8526043,8526157-8526351
Length = 399
Score = 30.7 bits (66), Expect = 0.98
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +3
Query: 207 DKYRDYKFTKKFAKEAGVLTIPPTAFYSEEHKHLGENFARFCFIKKDENLDLTAKLLKEW 386
+K KF + A + L PT+ YS E + + + + + K + ++T + EW
Sbjct: 260 EKKESKKFEQDKANQMPSLASAPTSSYSSEAEAMADTWEKEKMAKIKKQYNMTMDTIVEW 319
Query: 387 NDKKK 401
+KK
Sbjct: 320 EAEKK 324
>10_08_0002 - 13986969-13989338
Length = 789
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 207 DKYRDYKFTKKFAKEAGVLTIPPTAFYSEEHKHLGENFARFCFIKKDENLDLTAKLLKE 383
+K+R+Y + + + L IP T + E H+H A F FI +D L LL +
Sbjct: 287 EKFREYYYNNRLMQLNLDLQIPTTQPFMESHQHFLAQIAGF-FIVEDRVLRTADGLLSD 344
>03_04_0071 + 17048222-17048227,17048348-17048601,17048679-17048940
Length = 173
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +1
Query: 178 RTRLIYHRNRINIEITSSRRSLRRKPAYSRYRR 276
RTRL HR R+ + +SSR S RR P R RR
Sbjct: 74 RTRLHRHR-RLPLPRSSSRLSRRRSPEEERRRR 105
>12_01_0708 - 6137865-6140909
Length = 1014
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 96 VETLKDNGFNPTVPEAGYFIVADWTKLANKIDLSSEPDKY--RDYKFTKKFAKEAGVLTI 269
+ + N FN T+PEA + ++ +++ L E Y + Y+FT + +TI
Sbjct: 784 IADMASNNFNGTLPEAWFTMLKSMNAISDNDTLVMENQYYHGQTYQFTAAVTYKGNYITI 843
>01_05_0080 -
17957276-17957676,17957810-17957921,17958001-17958126,
17958199-17958331,17960069-17960193,17960314-17960409,
17960430-17960621,17960694-17960800,17961318-17961426,
17961538-17961624,17963017-17963103,17964254-17964379
Length = 566
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 84 RDSLVETLKDNGFNPTVPEAGYFI 155
R++LV +D+G +P VP YFI
Sbjct: 192 REALVSLSRDSGLHPLVPYFSYFI 215
>08_02_1140 + 24649869-24651029
Length = 386
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 534 CIVHYNCRLLYIYNHKNITLIN 469
CIVH+ CR++ I++ K L N
Sbjct: 128 CIVHHGCRMMQIFSIKIAALSN 149
>06_02_0263 - 13566621-13569875
Length = 1084
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +1
Query: 109 KITGSIRPYPRPVTLS*PIGLNSRTRLIYHRNRINIEITSSRRSLRRKPAYSRYRRPHSI 288
++ + + Y R VT P L Y R+ +I+ +R R +P Y RY P+S
Sbjct: 1019 EVVMTTKEYMREVTAIDPRWLVELAPRFY-RSADPTKISKRKRQERIEPLYDRYNEPNSW 1077
Query: 289 RRS 297
R S
Sbjct: 1078 RLS 1080
>05_01_0035 -
232656-232781,233212-233322,233419-233563,233749-233882,
234341-234412,234485-234548,234632-234699,234894-235129,
236857-237166,237495-238460,238752-238931,239041-239346,
239593-239727,239810-240046,240120-240308,240521-240709,
240929-241024,241117-241323,241700-241893,242979-243216
Length = 1400
Score = 27.5 bits (58), Expect = 9.2
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Frame = +3
Query: 57 SLARELLPKRDSLVETLKDNGFNPTVPEAGYF----IVADWTKLANKIDLSSEPDKYRDY 224
S+A E +P L LK+N +NP P AG +VA + K + I L+ PD +
Sbjct: 398 SVADEKIPFLAYLASFLKENKYNPCEPPAGCLNFRNLVAGFMKSYHHIPLT--PDNVVVF 455
Query: 225 KFTKKFAKEAGVLTIPPTAFYSEEH--KHL 308
++ A E + P +EH +HL
Sbjct: 456 P-SRAVAIENALRLFSPALAIVDEHLTRHL 484
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,520,308
Number of Sequences: 37544
Number of extensions: 247190
Number of successful extensions: 575
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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