Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_D05
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69793-6|CAI46593.1|  424|Caenorhabditis elegans Hypothetical pr...    91   6e-19
Z69793-5|CAA93673.2|  441|Caenorhabditis elegans Hypothetical pr...    91   6e-19
AL031621-5|CAA20930.1|  437|Caenorhabditis elegans Hypothetical ...    64   6e-11
U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U70849-7|AAF99925.2|  332|Caenorhabditis elegans Collagen protei...    30   1.2  
Z50109-3|CAA90437.2|  114|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U53338-3|AAA96191.1|  534|Caenorhabditis elegans Ammonium transp...    27   8.2  

>Z69793-6|CAI46593.1|  424|Caenorhabditis elegans Hypothetical
           protein R03A10.4b protein.
          Length = 424

 Score = 91.1 bits (216), Expect = 6e-19
 Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
 Frame = +3

Query: 60  LARELLPKRDSLVETLKDNGFNPTVPEAGYFIVADWTKLANKIDLSSEPDKYRDYKFTKK 239
           L+ EL  KRD L + L++  F P +P+AGYF++AD+  L   I+L +E D   D+ F++ 
Sbjct: 313 LSGELRAKRDKLAKMLEEGNFRPIIPDAGYFMLADYVHLKEGINLPTEEDP-DDFVFSRW 371

Query: 240 FAKEAGVLTIPPTAFYS-EEHKHLGENFARFCFIKKDENLDLTAKLLKE 383
             +E  +  IPP+AFYS  ++K    N  R C+ KKDE LD   ++LK+
Sbjct: 372 LCREKKLAVIPPSAFYSARDNKLKNSNMVRLCYFKKDETLDAAEEILKK 420


>Z69793-5|CAA93673.2|  441|Caenorhabditis elegans Hypothetical
           protein R03A10.4a protein.
          Length = 441

 Score = 91.1 bits (216), Expect = 6e-19
 Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
 Frame = +3

Query: 60  LARELLPKRDSLVETLKDNGFNPTVPEAGYFIVADWTKLANKIDLSSEPDKYRDYKFTKK 239
           L+ EL  KRD L + L++  F P +P+AGYF++AD+  L   I+L +E D   D+ F++ 
Sbjct: 330 LSGELRAKRDKLAKMLEEGNFRPIIPDAGYFMLADYVHLKEGINLPTEEDP-DDFVFSRW 388

Query: 240 FAKEAGVLTIPPTAFYS-EEHKHLGENFARFCFIKKDENLDLTAKLLKE 383
             +E  +  IPP+AFYS  ++K    N  R C+ KKDE LD   ++LK+
Sbjct: 389 LCREKKLAVIPPSAFYSARDNKLKNSNMVRLCYFKKDETLDAAEEILKK 437


>AL031621-5|CAA20930.1|  437|Caenorhabditis elegans Hypothetical
           protein F28H6.3 protein.
          Length = 437

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 7/139 (5%)
 Frame = +3

Query: 3   RSFEYELSRI--NSSDCYFYS-LARELLPKRDSLVETLKDNGFNPTVPEAGYFIVADWTK 173
           R+F+ +  +   N +  Y  + L +E++ KR  L   L+   F   +PEAG+F++A+   
Sbjct: 291 RAFQQDWPKFMENPNQSYLATGLPKEVMQKRKILANMLEKANFQTILPEAGFFMLAECKL 350

Query: 174 LANKIDLSSEPDKYR-DYKFTKKFAKEAGVLTIPPTAFYS-EEHKHLGENFARFCFIKKD 347
                  S    K   D +++K   +E  +  IP + F+S ++ KHL   F R CF KKD
Sbjct: 351 PMKSFSFSPIVGKDPLDVQYSKWLCREKKLAVIPFSIFFSSKDQKHLSGRFVRLCFFKKD 410

Query: 348 ENLDLTAKLLK--EWNDKK 398
             L    K+ K  E ND+K
Sbjct: 411 TTLQAAEKIFKTFENNDEK 429


>U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical
           protein C10G11.9 protein.
          Length = 203

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 223 TSSRRSLRRKPAYSRYRRPHSIRRSINTSE-RTLPGSASSRKTKTWT*PRNYSRNGMIRR 399
           + SRRS  R   Y R  R  S +RS + S  RT  GS SS ++++ +  R  SR    RR
Sbjct: 108 SKSRRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSRSSSRSRSGS--RRSSRRRSRRR 165

Query: 400 N 402
           +
Sbjct: 166 S 166


>U70849-7|AAF99925.2|  332|Caenorhabditis elegans Collagen protein
           111 protein.
          Length = 332

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 78  PKRDSLVETLKDNGFNPTVPEAGYFIVADWTKLANKIDLSSEPDKYRDYKF 230
           PKR++LVE+   +  +  VPE GY    D +K    ++   E   Y  +KF
Sbjct: 282 PKREALVES---SVISQEVPETGYGDGGDKSKREKVVETHQEEQTYDSFKF 329


>Z50109-3|CAA90437.2|  114|Caenorhabditis elegans Hypothetical
           protein C09H10.5 protein.
          Length = 114

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 288 SEEHKHLGENFARFCFIKKDENL 356
           S  + HLG NFA  C +K D N+
Sbjct: 61  SSLYHHLGHNFASNCSLKDDNNV 83


>U53338-3|AAA96191.1|  534|Caenorhabditis elegans Ammonium
           transporter homolog protein1 protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = -2

Query: 367 AVRSKFSSFLMKQNLAKFSPRCLCSSE*NAVGGIVSTPASF--ANFFVNL*SLYLSGSDD 194
           AVRSK ++ ++ +NL      C+C     A+G  ++   S    N FV     +LSG  D
Sbjct: 55  AVRSKNTTNILIKNLLD---SCICIIGYWAIGWALAYGDSGEGVNLFVGHSQFFLSGFSD 111

Query: 193 KSILFASLVQSATIK*PASGTV 128
               F   V SAT     SG V
Sbjct: 112 YPRFFFQYVFSATAATIVSGAV 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,309,377
Number of Sequences: 27780
Number of extensions: 231895
Number of successful extensions: 616
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)