Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_D05
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    27   0.11 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.45 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.45 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.2  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   7.4  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   9.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.8  

>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
 Frame = +1

Query: 199 RNRINIEITSSRRSLRRKPAYSRYRRPHSIRRSINTSERTL---PGSASSRKTKTWT*PR 369
           R R +      ++S + +  Y +YR   S  RS + +ER     P   SS   KT     
Sbjct: 36  RKRYSRSREREQKSYKNERKYRKYRE-RSKERSRDRTERERSREPKIISSLSNKTIHNNN 94

Query: 370 NYSRNGMIRRNKLYNN 417
           NY+ N      KLY N
Sbjct: 95  NYNNNNYNNYKKLYYN 110



 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 527 TIHFKTCYNVXRYNNI*KKYF 589
           TIH    YN   YNN  K Y+
Sbjct: 89  TIHNNNNYNNNNYNNYKKLYY 109


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 159 ADWTKLANKIDLSSEPDKYRDYKFTKKF 242
           A+W  +    D+ S  D Y+D    +KF
Sbjct: 54  AEWYDVGRNYDMESNMDMYKDKNVVQKF 81


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 159 ADWTKLANKIDLSSEPDKYRDYKFTKKF 242
           A+W  +    D+ S  D Y+D    +KF
Sbjct: 54  AEWYDVGRNYDMESNMDMYKDKNVVQKF 81


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 90  SLSWAVTRVPASRN 49
           S+ W +  VPASRN
Sbjct: 212 SVEWDILEVPASRN 225


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 161 GYDKVTGLGYGRIEPVIFQSLH*RVSL 81
           G+DK  G G   I  +I + LH  VS+
Sbjct: 122 GFDKKQGGGIELISHIISKQLHIPVSV 148


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 548 YNVXRYNNI*KKYFC*NIPKRDKI 619
           YN   YNN   K  C NI   ++I
Sbjct: 89  YNYSNYNNNNYKQLCYNINHIEQI 112


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 90  SLSWAVTRVPASRN 49
           S+ W + +VPA RN
Sbjct: 199 SVEWDIIKVPAVRN 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,145
Number of Sequences: 438
Number of extensions: 3514
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)