Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_D04
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23525-7|AAC46569.1|  557|Caenorhabditis elegans Yeast smf (diva...    27   7.0  
U23525-6|AAU05559.1|  471|Caenorhabditis elegans Yeast smf (diva...    27   7.0  
Z93377-3|CAB07580.1|  358|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z81070-1|CAB02997.1|  137|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AL132876-3|CAD21657.2|  746|Caenorhabditis elegans Hypothetical ...    27   9.3  

>U23525-7|AAC46569.1|  557|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 1, isoform
           a protein.
          Length = 557

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
 Frame = +2

Query: 8   VSDRSLNRITHSIYTINFVK-MKVAPVLFVVLLSLMCVVQCKDL-----IVGTSFN 157
           +SD   +R+    Y I  +  +  A VLFV+ L+L C+V C+ +     I G SFN
Sbjct: 478 ISDYVFSRLGSEWYIIMVLAPITFAYVLFVLYLALYCLVSCEIIPDTVSIRGFSFN 533


>U23525-6|AAU05559.1|  471|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 1, isoform
           b protein.
          Length = 471

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
 Frame = +2

Query: 8   VSDRSLNRITHSIYTINFVK-MKVAPVLFVVLLSLMCVVQCKDL-----IVGTSFN 157
           +SD   +R+    Y I  +  +  A VLFV+ L+L C+V C+ +     I G SFN
Sbjct: 392 ISDYVFSRLGSEWYIIMVLAPITFAYVLFVLYLALYCLVSCEIIPDTVSIRGFSFN 447


>Z93377-3|CAB07580.1|  358|Caenorhabditis elegans Hypothetical
           protein F13A7.7 protein.
          Length = 358

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +2

Query: 494 ITPRYYQLQLLFEKTRQHFMFIY 562
           +T R   +Q+LF+KTR+H++ ++
Sbjct: 94  LTGRNPAVQVLFDKTREHYILVH 116


>Z81070-1|CAB02997.1|  137|Caenorhabditis elegans Hypothetical
           protein F26E4.2 protein.
          Length = 137

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 173 QEKADYNAIPLKKRVKEVFFSDPGQQIIKGVIAR 274
           QE  D     +KKR  +V +S  G++++ GV+ +
Sbjct: 23  QEDGDEQIFDVKKRKPQVTYSGDGRRMLDGVVEK 56


>AL132876-3|CAD21657.2|  746|Caenorhabditis elegans Hypothetical
           protein Y105E8A.3 protein.
          Length = 746

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 149 SFNNRLIWQEKADYNAIPLKKRVKEVFFSDPGQQIIKGVIARDLDHTDAIAS 304
           S++N  +WQ K+D N   +  +VKE    +   Q+I+  ++  L  T A  S
Sbjct: 644 SYSNAHMWQHKSDINVASVHVQVKE----EANAQMIRHRVSNILKSTGATHS 691


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,328,576
Number of Sequences: 27780
Number of extensions: 251875
Number of successful extensions: 561
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)