Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_D03
         (285 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    26   1.2  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   2.8  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    23   8.5  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    23   8.5  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    23   8.5  

>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 157 THHQAVRRTACFCNVPNVET*NRKCINCQML 249
           T  Q  +RTA   N PNV   N   IN +ML
Sbjct: 321 TQQQQPQRTAAPPNNPNVNATNNNRINIEML 351


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 253 ILTFDS*CTSGFKFRRSVRCRSMRYVAQPDGGSISWTV 140
           IL  +S   + F+   S   +SMR+   P G  I W V
Sbjct: 444 ILQDNSVSNAHFENLNSTNWQSMRFKPPPPGSDIGWRV 481


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 273 IFLNIELY*HLTVDALPVLSFDVRYVAEACGTSH 172
           I LN +L   LT   L     D  +++ +CGT H
Sbjct: 151 ILLNKDLVVKLTDFGLSNFMLDGSFLSTSCGTPH 184


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 226 SGFKFRRSVRCRSMRYVAQPDGGS 155
           SG+  R S+R  S  Y   P+GG+
Sbjct: 70  SGYTHRFSIRPSSQTYNRYPNGGN 93


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 243 LTVDALPVLSFDVRYVAEACGTSHSLMV 160
           L+  A  +LS DV  + EAC  + +LMV
Sbjct: 90  LSYIASEILSSDVWSICEACVENKTLMV 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,200,702
Number of Sequences: 5004
Number of extensions: 22329
Number of successful extensions: 49
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)