Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_D03
(285 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0352 + 28240913-28241362 27 3.1
02_02_0632 - 12413660-12413677,12413839-12413870,12414377-124144... 26 4.1
07_03_1050 - 23570785-23570824,23570938-23571004,23571114-235711... 26 5.4
02_05_0685 + 30891289-30891810,30892740-30892915,30893379-308934... 26 5.4
10_07_0044 + 12319382-12319532,12319978-12320163,12320247-123203... 25 7.1
05_03_0171 + 9136755-9136791,9137100-9137179 25 7.1
03_01_0456 - 3495537-3496205,3496304-3496364,3496447-3496829,349... 25 7.1
08_02_1106 + 24350359-24351513 25 9.4
04_04_1060 - 30473509-30473619,30473815-30473850,30474063-304740... 25 9.4
04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241... 25 9.4
03_02_0659 - 10241375-10241538,10241806-10241860 25 9.4
02_02_0351 + 9257204-9261388 25 9.4
02_01_0120 + 884467-887649 25 9.4
>02_05_0352 + 28240913-28241362
Length = 149
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 158 PTIRLCDVPHASATYRTS 211
P+ RLC +P A++T RTS
Sbjct: 125 PSRRLCSIPRATSTRRTS 142
>02_02_0632 -
12413660-12413677,12413839-12413870,12414377-12414494,
12414794-12414860,12416098-12416237,12416378-12416470,
12416581-12416643,12418070-12418120,12419508-12419606,
12419876-12420012,12420121-12420219,12420346-12420523
Length = 364
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 29 GYGSHHLRSRNSYKKMPGW 85
G G H RSR +K+PGW
Sbjct: 80 GRGDHGHRSRQWSRKLPGW 98
>07_03_1050 -
23570785-23570824,23570938-23571004,23571114-23571196,
23572028-23572201,23572268-23572471,23572570-23573300
Length = 432
Score = 25.8 bits (54), Expect = 5.4
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -1
Query: 243 LTVDALPVLSFDVRYVAEACGTSHSLMVGPSHGR*GCHMTALLVVGSTTLSV 88
+ VD LP + F+ +Y + L HGR GC +T+LL +G T+ V
Sbjct: 193 VAVDRLPSMYFE-KY-GKPLRPDGWLTESQQHGRTGCSLTSLL-MGLNTIRV 241
>02_05_0685 +
30891289-30891810,30892740-30892915,30893379-30893492,
30893846-30893954,30894038-30894124,30895137-30895736,
30895823-30896101,30896808-30896897,30897151-30897507,
30897924-30898160,30898733-30898953,30899856-30899955,
30900042-30900188,30900287-30900385
Length = 1045
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 87 EHSVLYCPQQAEPSCDNPTVHEMDPPSG 170
E +V+YCP++ + C + TV D +G
Sbjct: 305 EETVIYCPKEVQLICLSATVANPDELAG 332
>10_07_0044 +
12319382-12319532,12319978-12320163,12320247-12320396,
12320495-12320644,12320728-12321417,12321641-12322033,
12322073-12322546,12322634-12323974,12324042-12324388
Length = 1293
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 69 RKCPAGEHSVLYCPQQAEPSCDNPT 143
R P E L CP+ + PS NPT
Sbjct: 386 RDKPCAESIALECPEGSSPSLLNPT 410
>05_03_0171 + 9136755-9136791,9137100-9137179
Length = 38
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3
Query: 142 VGLSHDGSACCGQYN 98
VG+ DG C GQYN
Sbjct: 5 VGVGADGEGCSGQYN 19
>03_01_0456 -
3495537-3496205,3496304-3496364,3496447-3496829,
3496924-3497613
Length = 600
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 166 DGGSISWTVGLSHDGSA 116
DGGS+S T+GL H +A
Sbjct: 542 DGGSVSLTLGLQHCNNA 558
>08_02_1106 + 24350359-24351513
Length = 384
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +3
Query: 51 GQGIPIRKCPAGEHSVLYCPQQA 119
G G+P CP GE Y P A
Sbjct: 114 GAGVPPPPCPRGEEPPFYQPTHA 136
>04_04_1060 -
30473509-30473619,30473815-30473850,30474063-30474095,
30474246-30474335,30474466-30475215
Length = 339
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 70 ENARLVNTQCCTAHNKQSRHV 132
++AR T CCT H S+H+
Sbjct: 27 DSARHKATNCCTRHGCSSKHL 47
>04_04_0397 -
24921892-24922947,24923486-24923734,24923807-24924157,
24924244-24924331,24924466-24924563,24925141-24925362,
24925490-24925585,24926410-24926481,24927156-24927305
Length = 793
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 158 PTIRLCDVPHASATYRTSKLKTG 226
P +RL + HA ++T LKTG
Sbjct: 682 PLVRLLEHLHAKKIFKTEDLKTG 704
>03_02_0659 - 10241375-10241538,10241806-10241860
Length = 72
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -3
Query: 166 DGGSISWTVGLSHDGSACCG 107
DG W + L DGS C G
Sbjct: 21 DGSGCGWLMDLISDGSGCLG 40
>02_02_0351 + 9257204-9261388
Length = 1394
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 126 SCDNPTVHEMDPPSGCATYRMLLQR 200
+CDN TVH DP C+ +++ +
Sbjct: 1203 NCDNLTVHGFDPLITCSLKELVVYK 1227
>02_01_0120 + 884467-887649
Length = 1060
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Frame = -3
Query: 166 DGGSISWTVGLSH-------DGSACCGQYNTECSPAGHFLIGIP*P 50
DGG W G+ + DG CC C AG ++G+ P
Sbjct: 46 DGGVDGWPAGVGNASSSSTSDGGDCCAWRGVACDEAGE-VVGVVLP 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,111,057
Number of Sequences: 37544
Number of extensions: 163359
Number of successful extensions: 437
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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