Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_C23
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    29   0.53 
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc...    26   3.8  
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    26   3.8  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   5.0  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   6.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   8.7  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   8.7  

>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = -2

Query: 369 SYNI*VSLVSIQ*FGLCVNTKIKDFLVLQXVXGHIIKVKQQTHILVSQD 223
           +Y+   SL++IQ     +NT   DFL +Q     ++  K+Q  +++SQ+
Sbjct: 506 TYSFVESLIAIQ--SAYINTNHPDFLGVQGAMAVVLSRKEQNRLMLSQE 552


>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 290

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 280 RLKNQKIFDFRIDTKTKSLY*NKADLNIVGNIVIELG 390
           +L+NQ   DF I     S++ N  D+NI+    IE+G
Sbjct: 180 KLRNQPENDF-ISIANHSVHSNAEDINIINEDYIEIG 215


>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 501 FEVGPEIINCENINDIKVQLDSELENAL 584
           F++ P++    NI DI+ Q+ S  E  L
Sbjct: 16  FQIAPDVKTISNIQDIRAQIQSFREKEL 43


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 142 VFLEKTSKGIKQYNIRPIDPWFISSLDVLADEDMRLLFH 258
           +FLE+ ++ +K+Y  + ++P   +   VL+D  M LL H
Sbjct: 3   LFLEEHAEYLKRYLEQALEPISDADASVLSDYAMALLRH 41


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -1

Query: 481 SIFKSYPYFAAPTLVALCCVSXPENNFEISRLIL*QCFL 365
           S+F SY Y A  + ++      PEN++++    L + ++
Sbjct: 429 SLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYI 467


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 391  RLIL*QCFLQYLGQPCFNTMIWSLCQYENQ 302
            ++ L Q F  +L Q    +++W LCQ  +Q
Sbjct: 1594 KISLIQIFRSHLWQKIHESVVWDLCQVLDQ 1623


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = -3

Query: 224 TSKDDMNQGSMGRILYCLMPLLVFSRNTFVD*PKQSKSVMSHGTNNDPSQKMLLTNVRKN 45
           TSK  +N      +L   +P    S+ +F D  +++        +NDP+ +ML  N +  
Sbjct: 320 TSKVVLNLNDPKLLLQPQLPKKEDSQRSFADTHQRNSLAWKFNISNDPAYEMLKQNHQSK 379

Query: 44  I 42
           +
Sbjct: 380 V 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,811
Number of Sequences: 5004
Number of extensions: 50758
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)