Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_C23
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730     31   0.96 
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198...    29   2.9  
03_02_0488 - 8824980-8825267,8825364-8827775                           28   6.8  
06_03_1473 - 30382528-30382731,30382814-30382930,30383048-303831...    27   8.9  
06_03_1298 + 29141578-29141623,29142129-29142250,29143818-291438...    27   8.9  

>12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730
          Length = 802

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +3

Query: 378 YRIRREISKLFSGXLTQHXATSVGAAKYGYDLKMDST-GVLHFEVGPEIINCENINDIKV 554
           ++I+ E+S L +  +T      V A+KY + + +D T  V H E    ++ C +++D K+
Sbjct: 285 HKIQNELSSLMASSITSSIIKIVKASKY-FSVILDCTPDVSHQEQMSLLVRCVHMSDGKI 343

Query: 555 QLDSELENALRRD 593
           ++       L+ D
Sbjct: 344 KVGEYFIGFLKVD 356


>06_03_0392 +
           20318728-20319309,20319596-20319725,20319844-20319895,
           20319995-20320061,20320547-20320633,20322526-20322567,
           20322635-20322740,20323155-20323219,20323299-20323343,
           20323442-20323549,20323636-20323723,20324147-20324193,
           20324355-20324363
          Length = 475

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 414 GXLTQHXATSVGAAKYG-YDLKMDSTGVLHFEVGPEIINCENIND 545
           G +T   + +V AAK G  D K+D T ++H  +G    + EN+ +
Sbjct: 394 GSVTNDVSGAVKAAKSGRVDFKIDKTAIVHVGLGKINFSDENLRE 438


>03_02_0488 - 8824980-8825267,8825364-8827775
          Length = 899

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 160 LFSQEIPSSTDPNNPNLSCRMVPTMTRHKKCS 65
           +FS    SS  P++ +L     PT+  H+ CS
Sbjct: 156 IFSSPSQSSASPSSKSLESNQSPTLNDHQHCS 187


>06_03_1473 -
           30382528-30382731,30382814-30382930,30383048-30383129,
           30383211-30383278,30383444-30383545,30383994-30384122,
           30384561-30384623,30384781-30384897,30385210-30386116,
           30386225-30386494,30386929-30386998,30387114-30387273
          Length = 762

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +1

Query: 112 DLDCLGQSTKVFLEKTSKGIKQYNIRPIDPWFISSLDVLADEDMRLLFHFNNVSXDRLKN 291
           D  CL +  +  LE+ SKG  ++ I  +D   I      A ++ +L+  FNN +  + K 
Sbjct: 36  DQKCLIEKHEGGLEEFSKGYLKFGINTVDGATIYREWAPAAQEAQLIGEFNNWNGAKHKM 95

Query: 292 QK 297
           +K
Sbjct: 96  EK 97


>06_03_1298 +
           29141578-29141623,29142129-29142250,29143818-29143874,
           29143983-29144138,29144220-29144304,29144575-29144665,
           29144807-29144971,29145064-29145186,29145334-29145409,
           29145513-29145642,29145951-29147824,29148339-29148529,
           29148697-29148860,29149164-29149275,29149276-29149294
          Length = 1136

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -1

Query: 160 LFSQEIPS-STDPNNPNLSCRMVPTMTRHKKCS*QT*EKI 44
           + ++EIPS ST P+  N +  + P + R+K CS    EK+
Sbjct: 722 VLTEEIPSCSTSPSTANGNHLLQPILGRNKHCSMINTEKV 761


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,356,031
Number of Sequences: 37544
Number of extensions: 288899
Number of successful extensions: 606
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)