Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_C23
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51993-3|AAB36853.2|  958|Caenorhabditis elegans Hypothetical pr...    31   0.49 
AF003130-13|AAK73876.1|  220|Caenorhabditis elegans Hypothetical...    27   8.1  

>U51993-3|AAB36853.2|  958|Caenorhabditis elegans Hypothetical
           protein F56F10.4 protein.
          Length = 958

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
 Frame = +1

Query: 22  NMNPVKIIFFLTF-VKSIFCDGSLLVPCDMTDLDCLGQSTKVFLEKTSKGIKQYNIRPID 198
           N   ++ IFF++  +  + CDG L++P  + D    G  TK       K   ++N     
Sbjct: 78  NKARIEHIFFISSNIALVLCDGQLIIPIHIKD----GVITK-------KEELRFNENHKS 126

Query: 199 PWFISSLDVLADEDMRLLFHFNNVSXDRLKNQKI 300
            W I+ +  L+D+   L+F  NN +  R+K++ +
Sbjct: 127 KWDITHVQKLSDDTFALVFSMNN-TIYRIKSKTL 159


>AF003130-13|AAK73876.1|  220|Caenorhabditis elegans Hypothetical
           protein F55A12.10 protein.
          Length = 220

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 1   FCKCLSCNMNPVKIIFFLTFVKSIFCDGSLLVP 99
           F  C  C  +P K  FF+T    +FC+     P
Sbjct: 3   FIVCNGCGCSPSKRQFFITACSHVFCETCRTTP 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,926,111
Number of Sequences: 27780
Number of extensions: 283026
Number of successful extensions: 681
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)