Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_C22
(497 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 59 3e-10
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 52 6e-08
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb... 48 8e-07
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 29 0.51
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 2.1
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 26 2.7
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 4.8
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph... 25 4.8
SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 6.3
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 25 6.3
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 25 6.3
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 25 8.4
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 8.4
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 59.3 bits (137), Expect = 3e-10
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Frame = +2
Query: 260 IKSYAGFFTVNKTYDSNQFFWYFPAMIPNKKDAPVIVWLQGGPGATSLYGLFTENGP--L 433
+K Y G+ V D + FFW+F + + D PV++WL GGPG +SL GLF E GP +
Sbjct: 586 VKQYTGYLDVED--DRHLFFWFFESRNDPEND-PVVLWLNGGPGCSSLTGLFMELGPSSI 642
Query: 434 RVRNNKFERRKYNWALSHHII 496
+ K E ++W + +I
Sbjct: 643 NIETLKPEYNPHSWNSNASVI 663
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 51.6 bits (118), Expect = 6e-08
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = +2
Query: 269 YAGFFTVNKTYDSNQFFWYFPAMIPNKKDAPVIVWLQGGPGATSLYGLFTENGPLRV 439
Y+G+ N D + F+ Y PA++ ++ IVWLQGGPG G F+ENGP+ +
Sbjct: 75 YSGYLEANS--DKSLFYTYAPAVVDSET---FIVWLQGGPGCAGTLGFFSENGPIEI 126
>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 510
Score = 48.0 bits (109), Expect = 8e-07
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 263 KSYAGFFTVNKTYDSNQFFWYFPAMIPNKKDAPVIVWLQGGPGATSLYGLFTENGPLRV- 439
+ +AG D + FFW F ++ P + ++ WL GGPG +S G E GP R+
Sbjct: 44 RMHAGHLNQTDQLDGDLFFWMFESVKPEYEHRSIL-WLNGGPGCSSEDGSLMEVGPFRLD 102
Query: 440 RNNKFERRKYNW 475
NN F+ W
Sbjct: 103 DNNTFQLNPGRW 114
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1328
Score = 28.7 bits (61), Expect = 0.51
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 293 KTYDSNQFFWYFPAMIPNKKDAPVIVWLQGGPGATSLYG 409
K + ++ + PA I KD +I+WL PG + +G
Sbjct: 905 KAFHLGEYNYGRPAQITGCKDNKLIIWLSTAPGLDAQWG 943
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 26.6 bits (56), Expect = 2.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 312 NSSGTFPP*YPTKKTLLSLYGYREAPVRPHFTGSS 416
N+ G++PP P+ + L YGY P + GS+
Sbjct: 114 NNFGSYPPTQPSTQPLPQSYGYPSYPPAGYRGGSA 148
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 26.2 bits (55), Expect = 2.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 213 VILPVSMYGVRKSGVPASPPSLSPR 139
V++P + V+KS VP+SP SPR
Sbjct: 526 VVVPSNAKAVKKSVVPSSPVVPSPR 550
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 4.8
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 223 PTFCYITGLDVWSEEKRC 170
P+ CYI VW E RC
Sbjct: 708 PSRCYICSESVWGSELRC 725
>SPBC15D4.04 |gpt2|gpt,
alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
acetylglucosaminephosphotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +2
Query: 80 LFVLQIFG-TECLLHRYPKINL 142
L V Q+FG EC HR PK+N+
Sbjct: 322 LSVPQLFGLVECPRHRLPKLNV 343
>SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 238
Score = 25.0 bits (52), Expect = 6.3
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Frame = +2
Query: 224 NLARVPFTESLRIKSYAGFFTVNKTY--DSNQFFWYFPAMIPNKKDAPVIVWLQGGPGAT 397
+ ARV + SL + + Y D+ F+ P ++P K A + G
Sbjct: 107 HFARVYLSSSLELSVRLLISRIPSYYFIDNQNFYRVSPQVLPKNK-AIALYEKDGFKSMK 165
Query: 398 SLYGLFTENGPLR 436
G F+ NGPL+
Sbjct: 166 KEQGFFSVNGPLK 178
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 355 VFFVGYHGGKVPEELVGVVSFIYSKKSGIAFN 260
+FFV GK+P + ++ I SK SG + +
Sbjct: 507 MFFVSGSSGKMPSSVKDAIAGIVSKYSGCSIS 538
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 6.3
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = -2
Query: 358 SVFFVGYHGGKVPEELVGVVSFI-YSKKSGIAFNTQTFSKRY---SSKVPTFCYITGLDV 191
S FF GY+ K PE + F Y +K + + K + + K C+++ +D
Sbjct: 429 SPFFKGYNEHKAPENNRDPIDFTKYEQKITAFKHAHIYDKIFLEEARKQVFHCFLSFIDS 488
Query: 190 WSEE 179
++EE
Sbjct: 489 YNEE 492
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 316 ELVGVVSFIYSKKSGIAFNTQTFSKRYSSKVPTF 215
E +G+ +I S ++ F +RY S +PT+
Sbjct: 455 EEIGIQKWIIQSLSKMSPTLNDFCRRYDSSMPTY 488
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 141 LAREMAETPAHRFSSLHTSRPVI 209
L + ETP HRF S++ R ++
Sbjct: 25 LLKNAKETPDHRFISVYNERGIV 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,189,835
Number of Sequences: 5004
Number of extensions: 47357
Number of successful extensions: 104
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -