Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_C20
         (154 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    25   1.0  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    24   2.4  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    23   4.1  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    23   5.5  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    23   7.2  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    22   9.5  
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch...    22   9.5  
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom...    22   9.5  

>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 11  LIVLSVLFVAETTCWRRDLPVIY 79
           L+  S +F +   CWR D P+IY
Sbjct: 383 LVKHSQIFHSYPFCWRSDTPLIY 405


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 130 FSPHTHRPDCGPWTKSRI 77
           + P TH+ DCG   ++RI
Sbjct: 164 YHPQTHKEDCGKRLQTRI 181


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 25  CVVCRRNDLLEKRFTCYLSYFSSTAHSRACE 117
           CV+C R   L K   C  S++  +  +  C+
Sbjct: 318 CVLCNRIPKLTKFKDCITSFYRPSVATNICD 348


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 14  IVLSVLFVAETTCWRRDLPVIYPTF 88
           I+L+ + V   + W+   PV +P F
Sbjct: 355 ILLNTILVYMVSNWKHRFPVFFPIF 379


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 53   WRRDLPVIYPTFRPRPTVGPVSMRAKL 133
            W+++L    P  +    VGP + RAK+
Sbjct: 1433 WQQELSTYAPFLKVSAYVGPPAERAKI 1459


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1418

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 97   PWTKSRINNR*ISSPTSRFGDKQHRQYDQS 8
            P +   I    ISS T    DKQ  +YD S
Sbjct: 1172 PGSPFPIETETISSITDTLSDKQKLKYDSS 1201


>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 209

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 73  YLSYFSSTAHSRACEYAG 126
           YL +FS+++   ACE +G
Sbjct: 134 YLLFFSNSSRFSACEESG 151


>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 304

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -2

Query: 108 PTVGRGRKVG*ITGKSLLQQVVSATNNTDNTIKVN 4
           PT+   +KVG I  + +    ++ATN +++ +++N
Sbjct: 154 PTINL-KKVGPILERLIASSSMAATNLSNSLVRIN 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 620,003
Number of Sequences: 5004
Number of extensions: 8424
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 31
effective length of database: 2,207,354
effective search space used: 41939726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)