Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_C20
         (154 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0112 - 838809-839748,839781-839908,840203-840274,840306-84...    29   0.51 
06_03_0672 + 23359510-23361253,23389969-23390203,23392078-233922...    27   2.7  
03_05_0720 + 27114301-27114548,27114647-27114926,27115104-271151...    26   3.6  
12_02_0045 + 12824766-12825417,12826608-12826753,12826825-128269...    25   6.3  
01_01_0138 + 1253256-1253534,1253625-1254359                           25   6.3  
12_02_0618 - 21262021-21262117,21262429-21262466,21262933-212629...    25   8.3  
07_03_0346 - 17010472-17010843                                         25   8.3  

>01_01_0112 -
           838809-839748,839781-839908,840203-840274,840306-840374,
           840634-840698,840732-840907,841006-841757
          Length = 733

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 115 HRPDCGPWTKSRINNR*ISSPTSRFGD 35
           HR DC P+T  R++N  +SSP  R GD
Sbjct: 38  HRHDCLPFTCGRLSN--VSSPFRRRGD 62


>06_03_0672 +
           23359510-23361253,23389969-23390203,23392078-23392234,
           23392535-23392597
          Length = 732

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +1

Query: 46  DLLEKRFTCYLSYFSSTAHSRACE 117
           DLL+   TCY+++ +S++ S +C+
Sbjct: 472 DLLDDSATCYIAHVASSSISTSCD 495


>03_05_0720 +
           27114301-27114548,27114647-27114926,27115104-27115154,
           27115679-27116000,27116610-27116718,27116754-27116802
          Length = 352

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 112 RPDCGPWTKSRINNR*ISSPTSRFGDKQHRQ 20
           RP C PWT+  +    ++      G++ H+Q
Sbjct: 16  RPYCVPWTRGSVATAAVAKAAPFRGEQNHKQ 46


>12_02_0045 +
           12824766-12825417,12826608-12826753,12826825-12826935,
           12827854-12828441
          Length = 498

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 55  EKRFTCYLSYFSSTAHSRACEYAG 126
           E++++C      +  HSRACE  G
Sbjct: 126 ERKWSCAACTLDNPGHSRACEACG 149


>01_01_0138 + 1253256-1253534,1253625-1254359
          Length = 337

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 10  FDRIVCVVCRRNDLLEKRFTCYLSYFSSTAHSRACEYA 123
           F R   ++C  NDL   R   Y++Y    AH RAC +A
Sbjct: 134 FLRAAKILCP-NDLFGCR--SYVAYHDVAAHQRACPHA 168


>12_02_0618 -
           21262021-21262117,21262429-21262466,21262933-21262986,
           21263274-21263438,21263523-21263759,21263857-21263918,
           21264543-21264656,21264816-21264942,21266200-21266218,
           21266338-21266428,21266932-21267094,21267182-21267330,
           21268147-21268287,21268368-21268533,21268568-21268631,
           21268729-21269084,21269759-21269977,21270328-21270433,
           21270713-21270942
          Length = 865

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = +2

Query: 56  RRDLPVIYPTFRPRP---TVGPVSMRAKLSADDEP 151
           RRDLPV+    RP P   T  P     +   DDEP
Sbjct: 57  RRDLPVLLAQPRPLPALVTYRPKWEGGEYEGDDEP 91


>07_03_0346 - 17010472-17010843
          Length = 123

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 98  PTVGPVSMRAKLSADD 145
           PT  PV  RAKLSA D
Sbjct: 6   PTATPVDTRAKLSASD 21


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,975,717
Number of Sequences: 37544
Number of extensions: 52873
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 14,793,348
effective HSP length: 31
effective length of database: 13,629,484
effective search space used: 258960196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)