Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_C19
(408 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 46 2e-06
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc... 37 0.001
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c... 27 1.1
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 27 1.5
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 3.4
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 4.5
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom... 25 4.5
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom... 25 4.5
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc... 24 7.9
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp... 24 7.9
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 24 7.9
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 46.4 bits (105), Expect = 2e-06
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = +3
Query: 237 ANAFRILMLSEVPGMAIEKVLISRNTSIIQDDVSTQ*IGTYP 362
ANAFR ++++E+P +A E V I NTSIIQD+V + IG P
Sbjct: 70 ANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVP 111
Score = 24.6 bits (51), Expect = 6.0
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 346 RLGLIPL*ADPSLFDY 393
R+GL+P+ ADP +F +
Sbjct: 106 RIGLVPISADPDMFKW 121
>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 297
Score = 37.1 bits (82), Expect = 0.001
Identities = 19/50 (38%), Positives = 32/50 (64%)
Frame = +3
Query: 231 AGANAFRILMLSEVPGMAIEKVLISRNTSIIQDDVSTQ*IGTYPTISRSI 380
A AN+ R ++L+E+P +AI+ V I+ NTS++ D+ +G P S +I
Sbjct: 27 AVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRLGMIPLDSSNI 76
>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 143
Score = 27.1 bits (57), Expect = 1.1
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 347 LLC*YVILYYRSITTNQNFLNSHAWYLAQHKYTKR 243
LL YV + + +TT+ N L + WYL +K+T R
Sbjct: 33 LLYDYVYIKEKLLTTSSNSLTHYQWYLI-YKHTCR 66
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 26.6 bits (56), Expect = 1.5
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = -3
Query: 355 VPIYCVDTSSCIIEV--LRLIRTFSIAMPG-TSLNISIRNAFAP 233
+PIY VD S+C I + + + +T+ + G +SL++ RN+ P
Sbjct: 474 LPIYHVDASACSISISLMDIAKTYGLTNTGKSSLSVG-RNSLHP 516
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.4 bits (53), Expect = 3.4
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -2
Query: 305 TNQNFLNSHAWYLAQHKYTKRIRASWLN 222
T+ + YL+Q +Y + +R WLN
Sbjct: 1908 TDLGLRRGRSQYLSQKRYDETVRTMWLN 1935
>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 109
Score = 25.0 bits (52), Expect = 4.5
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -3
Query: 100 HSLYEILLKNYVMFLRVSAFFCNSIGNRICK 8
H + L N+++F R+ + CN + IC+
Sbjct: 76 HFFFLFWLLNFILFFRIHLYSCNFRMSIICE 106
>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 4.5
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = -3
Query: 346 YCVDTSSCIIEVLRLIRTFSI 284
YC++T +C+ E++R++ I
Sbjct: 55 YCLNTFNCLAEIVRVVLVLDI 75
>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 25.0 bits (52), Expect = 4.5
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = -2
Query: 242 IRASWLNNRSGQSPSE--DAVHP 180
+R +WL + G+ PSE D HP
Sbjct: 20 VRDAWLKSHGGKKPSEVHDTPHP 42
>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 24.2 bits (50), Expect = 7.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 158 YLTNFSKFHYSSAIPSSYGAFFIRNSSKKL 69
YLTN+++ SA+P + G I S L
Sbjct: 170 YLTNYARPSPDSAVPGAVGTVAIITSKNNL 199
>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 24.2 bits (50), Expect = 7.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -3
Query: 148 ISQSSTIHQPFHHPMEHSLYEILLKNYVM 62
+S S H PFHHP + +++ Y++
Sbjct: 321 VSARSLRHVPFHHPKQIRGILAIVRQYLL 349
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 24.2 bits (50), Expect = 7.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 191 AVHPNESQYRIYLTNFSKFHYSSAIPSSYGAFFIRN 84
++ PN + YR + S + S PS+Y A + N
Sbjct: 229 SIRPNTTNYRSSIQENSNGNRDSISPSAYDAPLLHN 264
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,727,301
Number of Sequences: 5004
Number of extensions: 34223
Number of successful extensions: 98
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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