Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_C19
(408 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0668 - 10290541-10290644,10290777-10290911,10291812-102919... 50 5e-07
02_05_0574 - 30086264-30086367,30087653-30087746,30088293-300885... 48 3e-06
09_01_0053 + 873918-874411,875255-875492,875682-875702 38 0.004
07_03_0556 + 19438394-19438537,19438638-19438747,19442018-194422... 29 1.1
10_08_0006 - 14035990-14036135,14036246-14036339,14036845-140371... 29 1.4
03_02_0592 - 9687700-9687933,9688515-9688591,9688891-9688999,968... 29 1.9
05_04_0068 + 17635693-17637204 27 7.6
03_01_0527 + 3960982-3961290,3961371-3961464,3961898-3962084,396... 27 7.6
>03_02_0668 -
10290541-10290644,10290777-10290911,10291812-10291905,
10291994-10292089,10292458-10292639,10293578-10293658,
10293746-10293875,10293996-10294181,10294567-10294692
Length = 377
Score = 50.4 bits (115), Expect = 5e-07
Identities = 23/42 (54%), Positives = 33/42 (78%)
Frame = +3
Query: 237 ANAFRILMLSEVPGMAIEKVLISRNTSIIQDDVSTQ*IGTYP 362
ANAFR ++++EVP MAIEKVL++ NTS+I D+V + +G P
Sbjct: 94 ANAFRRILIAEVPTMAIEKVLMADNTSVIADEVLSHRLGLIP 135
Score = 31.1 bits (67), Expect = 0.35
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +1
Query: 346 RLGLIPL*ADPSLFDYRPED 405
RLGLIPL ADP LF+Y E+
Sbjct: 130 RLGLIPLDADPRLFEYISEN 149
>02_05_0574 -
30086264-30086367,30087653-30087746,30088293-30088555,
30089122-30089202,30089293-30089422,30089545-30089730,
30090013-30090138
Length = 327
Score = 48.0 bits (109), Expect = 3e-06
Identities = 22/42 (52%), Positives = 32/42 (76%)
Frame = +3
Query: 237 ANAFRILMLSEVPGMAIEKVLISRNTSIIQDDVSTQ*IGTYP 362
ANAFR ++++E+P MAIEKVL+ NTS+I D+V + +G P
Sbjct: 94 ANAFRRILIAELPTMAIEKVLMVDNTSVIADEVLSHRLGLIP 135
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 346 RLGLIPL*ADPSLFDYRPED 405
RLGLIPL ADP F+Y E+
Sbjct: 130 RLGLIPLDADPRHFEYMSEN 149
>09_01_0053 + 873918-874411,875255-875492,875682-875702
Length = 250
Score = 37.5 bits (83), Expect = 0.004
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +3
Query: 237 ANAFRILMLSEVPGMAIEKVLISRNTSIIQDDVSTQ*IGTYP-TISRSIIVRLS 395
ANA R +M++EVP +AI+ V I N+S++ D+ +G P T + ++ +R S
Sbjct: 38 ANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSAAAMAMRFS 91
>07_03_0556 +
19438394-19438537,19438638-19438747,19442018-19442288,
19442398-19442504,19442625-19443017,19443326-19443700,
19443799-19443877,19444745-19444957
Length = 563
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 189 RIFRWTLT*SVVQPAGANAFRILMLSEVPGMAIEKV 296
R F WT+T + P G IL+ + PG IE V
Sbjct: 29 RFFTWTVTYGDITPLGVKQQGILINGQFPGPTIEAV 64
>10_08_0006 -
14035990-14036135,14036246-14036339,14036845-14037176,
14038040-14038094,14038682-14038750,14038940-14039039,
14039212-14039255,14039705-14039873,14040262-14040333,
14040439-14040519,14040586-14040650,14040796-14041260
Length = 563
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 236 ASWLNNRSGQSPSEDAVHPNESQYRIYLTNFSKFHYSSAIPSS 108
A W ++ G S S A P+ S YR LTN + +++ SS
Sbjct: 376 AGWTPDQWGHSKSRSAFSPDYSTYRQQLTNLMRSLLKASLLSS 418
>03_02_0592 -
9687700-9687933,9688515-9688591,9688891-9688999,
9689162-9689260,9689368-9689454,9689570-9689630,
9689739-9689813,9689936-9689961
Length = 255
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 211 PDRLFSQLARMRFVYLC*ARYQAWLLRKF 297
P RLF R+ Y C +AW++R F
Sbjct: 25 PPRLFDGTTRLYICYFCPFAQRAWIIRNF 53
>05_04_0068 + 17635693-17637204
Length = 503
Score = 26.6 bits (56), Expect = 7.6
Identities = 17/69 (24%), Positives = 28/69 (40%)
Frame = -2
Query: 263 QHKYTKRIRASWLNNRSGQSPSEDAVHPNESQYRIYLTNFSKFHYSSAIPSSYGAFFIRN 84
+H Y + IR+ +++ G SPS + S Y + S H + S R
Sbjct: 17 RHSYLQEIRSLAVDSAGGWSPSSSSRSARSSSYYSSSKSSSSRHRYAPYSISSSRRLARL 76
Query: 83 SSKKLRDVS 57
K RD++
Sbjct: 77 EDKSPRDIA 85
>03_01_0527 +
3960982-3961290,3961371-3961464,3961898-3962084,
3962194-3962449,3962561-3962773,3962856-3962942,
3963089-3963223,3963296-3963409,3963507-3963754,
3963824-3963904,3963979-3964210,3964340-3964438,
3964513-3964701,3964928-3965023
Length = 779
Score = 26.6 bits (56), Expect = 7.6
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +2
Query: 149 SLDRCGIVIR*DGPHLQMDFDLIGCSASWRECVSYTYVERGTRHGY 286
+LD C I D PHLQM DL S E TY R+ Y
Sbjct: 409 ALDSCLITRSDDAPHLQMPRDLRLRSYHTLEYYRMTYDHIAQRYPY 454
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,493,372
Number of Sequences: 37544
Number of extensions: 194222
Number of successful extensions: 425
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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