Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_C19
         (408 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC008863-1|AAH08863.1|  346|Homo sapiens polymerase (RNA) I poly...    54   2e-07
BC008118-1|AAH08118.1|  338|Homo sapiens POLR1C protein protein.       54   2e-07
AL355802-13|CAI42630.1|  139|Homo sapiens RP3-337H4.4 protein.         54   2e-07
AL355802-12|CAI42629.1|  346|Homo sapiens RP3-337H4.4 protein.         54   2e-07
AL355802-11|CAI42628.1|  314|Homo sapiens RP3-337H4.4 protein.         54   2e-07
AF008442-1|AAC14354.1|  346|Homo sapiens RNA polymerase I subuni...    54   2e-07

>BC008863-1|AAH08863.1|  346|Homo sapiens polymerase (RNA) I
           polypeptide C, 30kDa protein.
          Length = 346

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 24/47 (51%), Positives = 34/47 (72%)
 Frame = +3

Query: 222 VQPAGANAFRILMLSEVPGMAIEKVLISRNTSIIQDDVSTQ*IGTYP 362
           +  A ANAFR ++L+EVP MA+EKVL+  NTSI+QD++    +G  P
Sbjct: 68  IDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIP 114



 Score = 31.5 bits (68), Expect = 1.1
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +1

Query: 346 RLGLIPL*ADPSLFDYR 396
           RLGLIP+ ADP LF+YR
Sbjct: 109 RLGLIPIHADPRLFEYR 125


>BC008118-1|AAH08118.1|  338|Homo sapiens POLR1C protein protein.
          Length = 338

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 24/47 (51%), Positives = 34/47 (72%)
 Frame = +3

Query: 222 VQPAGANAFRILMLSEVPGMAIEKVLISRNTSIIQDDVSTQ*IGTYP 362
           +  A ANAFR ++L+EVP MA+EKVL+  NTSI+QD++    +G  P
Sbjct: 60  IDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIP 106



 Score = 31.5 bits (68), Expect = 1.1
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +1

Query: 346 RLGLIPL*ADPSLFDYR 396
           RLGLIP+ ADP LF+YR
Sbjct: 101 RLGLIPIHADPRLFEYR 117


>AL355802-13|CAI42630.1|  139|Homo sapiens RP3-337H4.4 protein.
          Length = 139

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 24/47 (51%), Positives = 34/47 (72%)
 Frame = +3

Query: 222 VQPAGANAFRILMLSEVPGMAIEKVLISRNTSIIQDDVSTQ*IGTYP 362
           +  A ANAFR ++L+EVP MA+EKVL+  NTSI+QD++    +G  P
Sbjct: 67  IDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIP 113



 Score = 31.5 bits (68), Expect = 1.1
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +1

Query: 346 RLGLIPL*ADPSLFDYR 396
           RLGLIP+ ADP LF+YR
Sbjct: 108 RLGLIPIHADPRLFEYR 124


>AL355802-12|CAI42629.1|  346|Homo sapiens RP3-337H4.4 protein.
          Length = 346

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 24/47 (51%), Positives = 34/47 (72%)
 Frame = +3

Query: 222 VQPAGANAFRILMLSEVPGMAIEKVLISRNTSIIQDDVSTQ*IGTYP 362
           +  A ANAFR ++L+EVP MA+EKVL+  NTSI+QD++    +G  P
Sbjct: 68  IDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIP 114



 Score = 31.5 bits (68), Expect = 1.1
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +1

Query: 346 RLGLIPL*ADPSLFDYR 396
           RLGLIP+ ADP LF+YR
Sbjct: 109 RLGLIPIHADPRLFEYR 125


>AL355802-11|CAI42628.1|  314|Homo sapiens RP3-337H4.4 protein.
          Length = 314

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 24/47 (51%), Positives = 34/47 (72%)
 Frame = +3

Query: 222 VQPAGANAFRILMLSEVPGMAIEKVLISRNTSIIQDDVSTQ*IGTYP 362
           +  A ANAFR ++L+EVP MA+EKVL+  NTSI+QD++    +G  P
Sbjct: 68  IDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIP 114



 Score = 31.5 bits (68), Expect = 1.1
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +1

Query: 346 RLGLIPL*ADPSLFDYR 396
           RLGLIP+ ADP LF+YR
Sbjct: 109 RLGLIPIHADPRLFEYR 125


>AF008442-1|AAC14354.1|  346|Homo sapiens RNA polymerase I subunit
           hRPA39 protein.
          Length = 346

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 24/47 (51%), Positives = 34/47 (72%)
 Frame = +3

Query: 222 VQPAGANAFRILMLSEVPGMAIEKVLISRNTSIIQDDVSTQ*IGTYP 362
           +  A ANAFR ++L+EVP MA+EKVL+  NTSI+QD++    +G  P
Sbjct: 68  IDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIP 114



 Score = 31.5 bits (68), Expect = 1.1
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +1

Query: 346 RLGLIPL*ADPSLFDYR 396
           RLGLIP+ ADP LF+YR
Sbjct: 109 RLGLIPIHADPRLFEYR 125


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,076,462
Number of Sequences: 237096
Number of extensions: 1106295
Number of successful extensions: 2581
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2581
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 3043111070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)