Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_C19
         (408 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125965-2|AAL38961.1|  366|Caenorhabditis elegans Hypothetical ...    46   8e-06
Z80215-1|CAB02268.2|  282|Caenorhabditis elegans Hypothetical pr...    38   0.004
Z66494-1|CAA91262.2|  320|Caenorhabditis elegans Hypothetical pr...    29   0.98 
Z34801-3|CAA84327.1|  520|Caenorhabditis elegans Hypothetical pr...    29   1.3  
U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical pr...    28   3.0  
L14730-2|AAB37562.2|  187|Caenorhabditis elegans C.elegans homeo...    27   3.9  
AY647457-1|AAT67384.1|  187|Caenorhabditis elegans homeobox gene...    27   3.9  
Z66496-6|CAA91281.3|  191|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z48585-12|CAI46589.1|  191|Caenorhabditis elegans Hypothetical p...    27   5.2  
U39741-2|AAQ81278.1|  279|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z83230-9|CAB05748.1|  248|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical p...    26   9.1  
Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>AF125965-2|AAL38961.1|  366|Caenorhabditis elegans Hypothetical
           protein H43I07.2 protein.
          Length = 366

 Score = 46.4 bits (105), Expect = 8e-06
 Identities = 20/42 (47%), Positives = 31/42 (73%)
 Frame = +3

Query: 237 ANAFRILMLSEVPGMAIEKVLISRNTSIIQDDVSTQ*IGTYP 362
           ANA R ++++EVP MA+EK+ + +NTS+IQD+V    +G  P
Sbjct: 80  ANALRRVLIAEVPTMALEKIYLYQNTSVIQDEVLCHRLGLLP 121


>Z80215-1|CAB02268.2|  282|Caenorhabditis elegans Hypothetical
           protein C36B1.3 protein.
          Length = 282

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 18/45 (40%), Positives = 28/45 (62%)
 Frame = +3

Query: 237 ANAFRILMLSEVPGMAIEKVLISRNTSIIQDDVSTQ*IGTYPTIS 371
           AN+ R + ++EVP +AI+ V I  NTS++ D+     +G  P IS
Sbjct: 31  ANSLRRVFMAEVPTIAIDWVQIETNTSVLHDEFIAHRMGLIPFIS 75


>Z66494-1|CAA91262.2|  320|Caenorhabditis elegans Hypothetical
           protein C34C6.1 protein.
          Length = 320

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 352 PIYCVDTSSCIIEVLRLIRTFSIAMPGTSLNISI 251
           P+ C +T S  IE+L+ + T S  +PG  L++ I
Sbjct: 10  PLVCDETYSSSIEILKYLLTISYLIPGGILHLFI 43


>Z34801-3|CAA84327.1|  520|Caenorhabditis elegans Hypothetical
           protein F59A2.2 protein.
          Length = 520

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 224 NNRSGQSPSEDAVHPNES 171
           +NR  +SPSED++H NES
Sbjct: 99  SNRRRRSPSEDSIHSNES 116


>U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical
           protein F12D9.1a protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -2

Query: 227 LNNRSGQSPSEDAVHPNESQYRIYLTN-FSKFHYSSAIPSSYGAFF-IRNSS 78
           +NN SG    E  + P+ES+Y+ YL    S+   +    +S   FF +RN++
Sbjct: 126 INNNSGIIYDEIEIPPSESEYKCYLNPLLSQVDLTDISLASLALFFSLRNTT 177


>L14730-2|AAB37562.2|  187|Caenorhabditis elegans C.elegans homeobox
           protein 16 protein.
          Length = 187

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -3

Query: 229 G*TTDQVKVHLKMRSILTNHNTASI*RISQSSTIHQPFHHPMEHSLYEIL 80
           G    Q+K+  + +      +T+S+ R   SS    P +HP  H  Y+++
Sbjct: 125 GLNESQIKIWFQNKRAKLKKSTSSVPRDRCSSVTPNPHNHPSIHGGYQLM 174


>AY647457-1|AAT67384.1|  187|Caenorhabditis elegans homeobox gene 16
           protein.
          Length = 187

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -3

Query: 229 G*TTDQVKVHLKMRSILTNHNTASI*RISQSSTIHQPFHHPMEHSLYEIL 80
           G    Q+K+  + +      +T+S+ R   SS    P +HP  H  Y+++
Sbjct: 125 GLNESQIKIWFQNKRAKLKKSTSSVPRDRCSSVTPNPHNHPSIHGGYQLM 174


>Z66496-6|CAA91281.3|  191|Caenorhabditis elegans Hypothetical
           protein E04D5.4 protein.
          Length = 191

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 179 NESQYRIYLTNFSKFHY-SSAIPSSYGAFFIRNSSKKLRDVSSSF 48
           N + + I L  FS  H  ++A+  + G   +R + + L DVSSSF
Sbjct: 5   NLTVHIILLVTFSVSHVVTTAVTKATGETTVRGAGQDLGDVSSSF 49


>Z48585-12|CAI46589.1|  191|Caenorhabditis elegans Hypothetical
           protein E04D5.4 protein.
          Length = 191

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 179 NESQYRIYLTNFSKFHY-SSAIPSSYGAFFIRNSSKKLRDVSSSF 48
           N + + I L  FS  H  ++A+  + G   +R + + L DVSSSF
Sbjct: 5   NLTVHIILLVTFSVSHVVTTAVTKATGETTVRGAGQDLGDVSSSF 49


>U39741-2|AAQ81278.1|  279|Caenorhabditis elegans Hypothetical
           protein F12D9.1b protein.
          Length = 279

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 227 LNNRSGQSPSEDAVHPNESQYRIYL 153
           +NN SG    E  + P+ES+Y+ YL
Sbjct: 126 INNNSGIIYDEIEIPPSESEYKCYL 150


>Z83230-9|CAB05748.1|  248|Caenorhabditis elegans Hypothetical
           protein F56A8.8 protein.
          Length = 248

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
 Frame = -2

Query: 281 HAWYLAQHKYTKRIRASWLNNRS--------GQSPSEDAVHPNESQYRIYLTNFSKFHYS 126
           H++YL    Y KR+  S L N+S         QS        N++    Y+T+ ++ HY 
Sbjct: 171 HSYYLTLFVYQKRVEESTLFNKSLVRMIPEVLQSMLNVGTFGNQNIGIDYVTDCTREHYK 230

Query: 125 SAIPSSYGAFFI 90
            ++ +  G  F+
Sbjct: 231 KSVNTDAGIQFL 242


>Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical protein
            C18D4.2b protein.
          Length = 1376

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
 Frame = -2

Query: 224  NNRSGQSPSEDAVHPNESQYR---------IYLTNFSKFHYSSAIPSSYGAFFIRNSS 78
            ++ +G SP +D   P+ SQ R         IY    SKFH   ++ + + AF  RN+S
Sbjct: 1242 SSNNGASPEDDL--PSTSQIRSSTMQRRSEIYQQGLSKFHMLLSMAAVHSAFDSRNTS 1297


>Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical protein
            C18D4.2a protein.
          Length = 1817

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
 Frame = -2

Query: 224  NNRSGQSPSEDAVHPNESQYR---------IYLTNFSKFHYSSAIPSSYGAFFIRNSS 78
            ++ +G SP +D   P+ SQ R         IY    SKFH   ++ + + AF  RN+S
Sbjct: 1242 SSNNGASPEDDL--PSTSQIRSSTMQRRSEIYQQGLSKFHMLLSMAAVHSAFDSRNTS 1297


>Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical
            protein C18D4.2b protein.
          Length = 1376

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
 Frame = -2

Query: 224  NNRSGQSPSEDAVHPNESQYR---------IYLTNFSKFHYSSAIPSSYGAFFIRNSS 78
            ++ +G SP +D   P+ SQ R         IY    SKFH   ++ + + AF  RN+S
Sbjct: 1242 SSNNGASPEDDL--PSTSQIRSSTMQRRSEIYQQGLSKFHMLLSMAAVHSAFDSRNTS 1297


>Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical protein
            C18D4.2a protein.
          Length = 1817

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
 Frame = -2

Query: 224  NNRSGQSPSEDAVHPNESQYR---------IYLTNFSKFHYSSAIPSSYGAFFIRNSS 78
            ++ +G SP +D   P+ SQ R         IY    SKFH   ++ + + AF  RN+S
Sbjct: 1242 SSNNGASPEDDL--PSTSQIRSSTMQRRSEIYQQGLSKFHMLLSMAAVHSAFDSRNTS 1297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,331,363
Number of Sequences: 27780
Number of extensions: 181390
Number of successful extensions: 435
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)