Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_C19
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   1.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   2.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.1  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 340 HSRLGLIPL*ADPSLFDYRPE 402
           H  LG +PL ADPS   +  E
Sbjct: 338 HELLGHMPLLADPSFAQFSQE 358


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 391 NRTMMDRLIVG*VPIYCVDTSSCIIEVLRLIRTFSIAMPGTSLNISIRNAF 239
           N+T + ++I G V      TS  +  +LRL R   ++   TS  +S +  F
Sbjct: 204 NKTAVRKVISGVVGAASSVTSIQVANLLRLFRIPLVSFFSTSPELSNKQRF 254


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = -2

Query: 233 SWLNNRSGQSPSEDAVHPNESQYRIYL 153
           SWL +     PSE     N  QY   L
Sbjct: 644 SWLKDGRAMGPSERVHVTNMDQYNSIL 670


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,412
Number of Sequences: 438
Number of extensions: 2456
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)