Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_C18
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    30   0.30 
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    28   1.2  
SPAC1610.01 ||SPAC17A5.17|conserved fungal protein|Schizosacchar...    27   2.8  
SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomy...    26   3.7  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    26   3.7  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   4.9  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    25   8.6  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    25   8.6  

>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 219 INYFYEKQDVSLSTIDITSQVDPHMNKYDCHG 314
           I  F  ++D+S + +DI   +D  +N +DC G
Sbjct: 466 IKCFLAQKDLSFAHLDIAGVMDKQLNSWDCDG 497


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
 Frame = +3

Query: 186 PSRDRDISGPVINYFYEKQDVSLSTIDITSQVDPH----MNKYDCHG-AVSLSSSMQSNV 350
           P R +++S  +I  FY+ +D S +  ++  ++  +    +  YD    +VS SS+   +V
Sbjct: 323 PLRSQNVS-QIICEFYDTRDASFALDELDGRIIHNCCLQVAYYDAMADSVSTSSASSLSV 381

Query: 351 PRPFSG 368
           PR FSG
Sbjct: 382 PRGFSG 387


>SPAC1610.01 ||SPAC17A5.17|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 217

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 108 SETMLHELPSTSD*NQYFESYISCTV 31
           S   LHE PST D N++ + ++  T+
Sbjct: 115 SSGTLHEAPSTEDENEFTDDFLELTL 140


>SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 476 RQNNEQSGVDLVALLKYLNISEGTILKAAG 565
           ++NN +S  DLV L + L ++E  ++K  G
Sbjct: 132 KRNNRESNKDLVDLYEGLAMTESNLMKTLG 161


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +3

Query: 177 RFSPSRDRDISGPVINYFYEKQDVSLSTIDITSQVDPHMNKYDCHGAVSLSSSMQSN 347
           R  P  D D SG    Y  E +      ++ TSQ  P  + YD  G  +LSS+   N
Sbjct: 65  REEPGADFDRSGSDQQYSAEAEANQEDDLNETSQQAPDPSSYDIRGQ-ALSSATWDN 120


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 509 VALLKYLNISEGTILKAAGSN 571
           +A   Y NISEGT    +GSN
Sbjct: 57  IASTSYYNISEGTYCHVSGSN 77


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 321 SLSSSMQSNVPRPFSGNHTHLN 386
           S S + Q NV  PF+ +H H N
Sbjct: 407 SASKNFQPNVTPPFAVHHDHFN 428


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -2

Query: 193 LDGENLPISVEFISTTFVGSFNA 125
           LDGEN PISV      F    NA
Sbjct: 108 LDGENKPISVASYQNKFTSEDNA 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,018
Number of Sequences: 5004
Number of extensions: 51235
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)