Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_C18
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1631 - 28258897-28259984,28260518-28260772,28260861-282609... 31 0.54
12_01_0723 - 6360652-6360753,6360898-6361239 30 1.3
03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964... 30 1.3
05_03_0394 - 13440871-13441098,13441197-13441394,13441491-134415... 28 6.7
04_03_0887 + 20557974-20558186,20558265-20558456,20558548-20558706 28 6.7
01_01_0513 + 3736893-3737047,3737298-3737340,3737631-3737765,373... 28 6.7
10_05_0101 - 9167383-9167679,9167883-9167961,9168161-9168326,916... 27 8.9
09_06_0291 - 22066550-22067610,22067721-22067975,22068093-220682... 27 8.9
06_03_0046 - 15852653-15854560 27 8.9
02_05_1157 - 34533625-34533875,34535279-34536340,34536673-345368... 27 8.9
02_03_0161 + 15828887-15828985,15829066-15829686,15829759-158299... 27 8.9
>07_03_1631 -
28258897-28259984,28260518-28260772,28260861-28260975,
28261097-28261149,28261238-28261498,28262122-28262175,
28262294-28262536,28262830-28263073,28263877-28263909
Length = 781
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 537 LILRYFNNATRST-PLCSLFCLYTHF*VLNNEHYADDQISTYVPDPIGNL 391
++L +N T L SL C + F +L N+ AD+++STY +G +
Sbjct: 83 IVLNADDNGEGGTFALYSLLCRHAKFSLLPNQQSADEELSTYYQPGVGGI 132
>12_01_0723 - 6360652-6360753,6360898-6361239
Length = 147
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +3
Query: 135 LPTNVVDINSTEMGRFSPSRDRDISGPVINYFYEKQDVSLSTIDITSQVDPHMNKYDC 308
LP NV+D S EMG + P ++ VI + +DV L I H+ ++DC
Sbjct: 96 LPRNVIDSASREMGLYPPKDGLCLN--VIRVAFPSRDVDLQNI----SEGTHLYEFDC 147
>03_02_0932 +
12495700-12495738,12495859-12496093,12496178-12496423,
12496519-12496572,12497329-12497589,12497750-12497802,
12497893-12498016,12498147-12498401,12498798-12499888,
12500001-12500007,12500316-12500445,12500617-12500731,
12500783-12500853,12501246-12501354,12501550-12501738,
12502519-12502644,12503048-12503563
Length = 1206
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 540 SLILRYFNNATRST-PLCSLFCLYTHF*VLNNEHYADDQISTY 415
S++LR +N T L SL C + + +L N AD+++STY
Sbjct: 81 SIVLRADDNGEGGTFALYSLICRHANVSLLPNRQIADEELSTY 123
>05_03_0394 -
13440871-13441098,13441197-13441394,13441491-13441594,
13441687-13442551,13442677-13443045,13443372-13443533,
13443838-13444056,13444138-13444656,13444742-13444819,
13446041-13446163
Length = 954
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 234 EKQDVSLSTIDITSQV---DPHMNKYDCHGAVSLSSSMQSNVPRPFSGNHT 377
EK D + +++ S +P +K DC G++SL+ S + R +GN T
Sbjct: 655 EKHDKNKMVVNLESPATASNPSRSKSDCSGSLSLNHSSELPSSRIQTGNST 705
>04_03_0887 + 20557974-20558186,20558265-20558456,20558548-20558706
Length = 187
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 494 SGVDLVALLKYLNISEGTILKAAGSNAGTFVVAYGVHK 607
+GVD+ LL + I+ G G GTF +AY HK
Sbjct: 125 AGVDVQDLLGKVGIATGE----TGGKVGTFALAYAAHK 158
>01_01_0513 +
3736893-3737047,3737298-3737340,3737631-3737765,
3737879-3738010,3738129-3738278,3738353-3738373,
3738468-3738675,3738796-3738877,3738983-3739088,
3739245-3739358,3739458-3739685
Length = 457
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 213 PVINYFYEKQDVSLSTIDITSQVDPHMNKYDC 308
PVI F ++S++ I +T+ D HM Y C
Sbjct: 211 PVILAFAACNNLSVTNIHLTNSADKHMTVYRC 242
>10_05_0101 -
9167383-9167679,9167883-9167961,9168161-9168326,
9169201-9169299,9169969-9171361
Length = 677
Score = 27.5 bits (58), Expect = 8.9
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +3
Query: 12 YFLNMFKLYTKCNFQNIGSNLTWKEVHVTSF 104
YF+ M+K Y + ++ ++ S + W E+ + +
Sbjct: 628 YFIRMYKRYNRASYNSVLSCVCWNEMKTSLY 658
>09_06_0291 -
22066550-22067610,22067721-22067975,22068093-22068207,
22068329-22068381,22068467-22068724,22069110-22069160,
22069577-22069822,22070427-22070652,22070984-22071100
Length = 793
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 537 LILRYFNNATRST-PLCSLFCLYTHF*VLNNEHYADDQISTY 415
++LR +N T L SL C + ++ N+H D ++TY
Sbjct: 105 IVLRANDNGQGGTFALYSLLCRHAKINIIPNQHRTDQDLTTY 146
>06_03_0046 - 15852653-15854560
Length = 635
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +3
Query: 387 MPGSQWGQGHKYLSDHLHSAHYLTLRNEYR 476
+P +W +SDHL H +R YR
Sbjct: 374 IPEHEWDHHRALISDHLFEVHMYEVRTAYR 403
>02_05_1157 -
34533625-34533875,34535279-34536340,34536673-34536837,
34536993-34537941
Length = 808
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 288 HMNKYDCHG-AVSLSSSMQSNVPRPFSGN 371
H++KY CHG +L + + P FSG+
Sbjct: 323 HLDKYPCHGVCTNLLGGYKCDCPHGFSGD 351
>02_03_0161 +
15828887-15828985,15829066-15829686,15829759-15829908,
15829994-15830389,15830455-15830487,15830553-15830693,
15830793-15830924,15830999-15831082,15831159-15831461,
15831543-15831734,15831805-15831942,15832019-15832143,
15832223-15832319
Length = 836
Score = 27.5 bits (58), Expect = 8.9
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = +3
Query: 78 WKEVHVTSFLKYPQSIALKLPTNVVDINSTE--MGRFSPSR-DRDISGPVINYFYEKQDV 248
W E++V ++LKY + L+ T VV I+ E G P + + I I+ F E V
Sbjct: 269 WNEMNVMTWLKYDKKCILETGTVVVVIDDPEEIKGDIVPVQCEGQIDEKKIDGFMEDNTV 328
Query: 249 S-LSTIDITSQVDPHMNKYDCHGAVS 323
+ + ++ DC GA +
Sbjct: 329 DVIHIVPEPEEIKGDNVSEDCQGATA 354
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,657,992
Number of Sequences: 37544
Number of extensions: 306391
Number of successful extensions: 733
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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