Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_C16
         (529 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1227 + 35531840-35532516,35532665-35532836,35533158-355333...    29   2.3  
07_03_1775 + 29431106-29431193,29431290-29431329,29431620-294320...    27   9.3  

>01_06_1227 +
           35531840-35532516,35532665-35532836,35533158-35533357,
           35533467-35533622,35536878-35537235,35537407-35537418
          Length = 524

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 42  SYPEICAKLINPNQNGKRLIFVRSTILANVWD--LCLPPS**YGEGGFWVSYED 197
           S P   AKL      GKR +FV  ++  N W+  +CL  S     G  +V++ED
Sbjct: 223 SMPRFDAKLFMERLRGKRFMFVGDSLNRNQWESMVCLVQS-AMSPGKKYVTWED 275


>07_03_1775 +
           29431106-29431193,29431290-29431329,29431620-29432080,
           29432173-29432363,29432503-29432635,29432839-29433428
          Length = 500

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
 Frame = -1

Query: 286 TKIIHGKVHDGHTAKVLCFHVTSFVSGRSGS-------S*ETQKPPSPYHQEGGRHRS 134
           T ++H  + + HT K+L   +   +SGR+GS           Q PP  +++ GG HR+
Sbjct: 37  TSVVH--LRNAHTRKLL--GLLDDISGRTGSLHALLLEESPKQAPPHHHNRHGGHHRA 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,712,820
Number of Sequences: 37544
Number of extensions: 293216
Number of successful extensions: 642
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)