Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_C15
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    27   2.0  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    27   2.7  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    26   3.6  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   3.6  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    26   4.7  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    23   6.2  

>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +1

Query: 7   YLLSYQNVFASPNYPKNYYPNQECTWELKADLGNRINLNF 126
           Y+     +   P YP +    + C W L+  + NR  +NF
Sbjct: 40  YIRMCITLLVHPEYPTSSNIQESCNWILQQVVENRSKINF 79


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 311 MDLKLNGYLCAAETTLQLKKKCFCTVHDFLTTTLRMRIVL 430
           + + + GY  A+   +Q   KC C + D ++  L  R+ L
Sbjct: 504 LPINIGGYANASNVQVQTAYKCACMLRDLISPYLLRRMKL 543


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 430 YEISGSGRKAVVKFLEFDLEGTYPDCKYD 516
           Y +S    KA +   +  LE TYP C  D
Sbjct: 268 YMVSKEPGKACMNMYDISLESTYPTCGMD 296


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 253  NSTYNRMKVVLRTDADTNLDGFKAE 327
            + +++R   VL T +DTNLD  +AE
Sbjct: 1637 HESFSRSSEVLPTSSDTNLDAKRAE 1661


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 499 DMFLLNRILET*PRPFYHCLIFHKYNSHAERSRQE-IVDCTKTFLFQLQCSFRR 341
           D  + N   E+  +P Y  +   + NS  +  RQ+ +++C    LFQL+ S  R
Sbjct: 777 DFPMANTNGESQTQPHYFEVSEEEINSSMDLGRQQDVLECIDHVLFQLEASLGR 830


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 23.0 bits (47), Expect(2) = 6.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 310 QD*CRRQFAIQPSSYCRWNYT 248
           QD CR     Q  S+C+W ++
Sbjct: 293 QDACRILIDNQVGSFCKWQFS 313



 Score = 20.6 bits (41), Expect(2) = 6.2
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -2

Query: 439 IFHKYNSHAERSRQEIVDCTKTFLFQLQCSFRRTKVPIQL 320
           IF+ Y S +    Q +    +T    +     + +VPIQL
Sbjct: 213 IFYSYKSSSNNLNQIVRFIFETTADMIGIDLAKRQVPIQL 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,653
Number of Sequences: 5004
Number of extensions: 48724
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)