Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_C15
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0867 - 6773411-6774682,6775008-6775643                           29   2.8  
01_07_0096 - 41059668-41059886,41059978-41060154,41060575-410607...    28   4.8  
03_01_0564 - 4176177-4178096                                           28   6.4  
02_02_0030 - 6207784-6208154,6208286-6211310                           27   8.5  

>01_01_0867 - 6773411-6774682,6775008-6775643
          Length = 635

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 406 YAPHENCTYEISGSGRKAVVKFLE-FDLEGTYPD 504
           Y P  NCT  I  S ++  + F++  D  GT+PD
Sbjct: 168 YKPPYNCTLMIDQSRKRGFIMFIDGHDYLGTFPD 201


>01_07_0096 -
           41059668-41059886,41059978-41060154,41060575-41060778,
           41060874-41061089,41061698-41061961,41062413-41062654,
           41062728-41062851,41062852-41062991,41063349-41063397,
           41063735-41063891,41063982-41064130,41064267-41064299,
           41064497-41064575,41064961-41065040,41065438-41065560
          Length = 751

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 463 PRPFYHCLIFHKYNSHAERSR-QEIVDCTKTFLFQLQCSFR 344
           PRP  +C++ +K+  H E  +  E  +  K     LQC  R
Sbjct: 250 PRPVENCVMLYKFRKHLESGQVSESQNIMKMITHTLQCMAR 290


>03_01_0564 - 4176177-4178096
          Length = 639

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 335 LCAAETTLQLKKKCFC-TVHDFLTTTLRMRIVLM 433
           LC AE  +Q+ ++CF   V  FL T + + I+L+
Sbjct: 222 LCVAEKNVQIDRRCFVRDVGFFLMTLVALSIILI 255


>02_02_0030 - 6207784-6208154,6208286-6211310
          Length = 1131

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +2

Query: 188  IGKMISILKWQGYADVSYHIRIIPPTIG*RLYCELTPTLILMDLKLNGYL 337
            +G+ IS+     YA    H + + P I    +C++ P+ +L+DL++  Y+
Sbjct: 928  LGERISLALDIAYALDYLHNQCVSPLI----HCDIKPSNVLLDLEMTAYV 973


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,251,301
Number of Sequences: 37544
Number of extensions: 281406
Number of successful extensions: 627
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)