Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_C14
         (603 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF459285-1|AAL66182.1|  447|Homo sapiens 5-hydroxytryptamine rec...    32   1.8  
BC131799-1|AAI31800.1|  447|Homo sapiens 5-hydroxytryptamine (se...    31   3.1  

>AF459285-1|AAL66182.1|  447|Homo sapiens 5-hydroxytryptamine
           receptor 3 subunit C protein.
          Length = 447

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +1

Query: 475 R*TSLCRLIIFFYNH*NHKFEFTFLVSKYFYIYRYLILGLNKE 603
           R TS+C+L IF++        FTF  S + Y    ++LG++KE
Sbjct: 157 RVTSICKLDIFYFPFDQQNCTFTF--SSFLYTVDSMLLGMDKE 197


>BC131799-1|AAI31800.1|  447|Homo sapiens 5-hydroxytryptamine
           (serotonin) receptor 3, family member C protein.
          Length = 447

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +1

Query: 475 R*TSLCRLIIFFYNH*NHKFEFTFLVSKYFYIYRYLILGLNKE 603
           R TS+C L IF++        FTF  S + Y    ++LG++KE
Sbjct: 157 RVTSICNLDIFYFPFDQQNCTFTF--SSFLYTVDSMLLGMDKE 197


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,726,071
Number of Sequences: 237096
Number of extensions: 1396402
Number of successful extensions: 1097
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6354183230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)