Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_C10
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 246 1e-66
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 246 2e-66
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 42 9e-05
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 29 0.38
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 29 0.67
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 27 2.7
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 26 3.5
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 26 4.7
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 6.2
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 25 8.2
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 25 8.2
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 246 bits (603), Expect = 1e-66
Identities = 117/164 (71%), Positives = 134/164 (81%)
Frame = -3
Query: 535 KIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXXLDE 356
K+ GEYGLRNK E+WRV TL++IR+AARELLTL+EKDPKRLFEGNA LDE
Sbjct: 29 KLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRLGILDE 88
Query: 355 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 176
+MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ+VN+PSF+V
Sbjct: 89 SRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVV 148
Query: 175 RLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 44
RLD+ KHIDF+L SP+GGGRPGR KRK LR Q GG + EE+
Sbjct: 149 RLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQEGGEGEEAEEE 192
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2
Query: 587 YVTPRRPFEKARLD 546
Y PRRPFE ARLD
Sbjct: 12 YKVPRRPFESARLD 25
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 246 bits (601), Expect = 2e-66
Identities = 117/163 (71%), Positives = 133/163 (81%)
Frame = -3
Query: 535 KIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXXLDE 356
K+ GEYGLRNK E+WRV TL++IR+AARELLTL+EKDPKRLFEGNA LDE
Sbjct: 29 KLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRLGILDE 88
Query: 355 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 176
+MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ+VN+PSF+V
Sbjct: 89 TRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVV 148
Query: 175 RLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEEE 47
RLD+ KHIDF+L SP+GGGRPGR KRK LR +GG EEE
Sbjct: 149 RLDTQKHIDFALSSPYGGGRPGRCKRKRLRSQEGGEGEEAEEE 191
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2
Query: 587 YVTPRRPFEKARLD 546
Y PRRPFE ARLD
Sbjct: 12 YKVPRRPFESARLD 25
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 41.5 bits (93), Expect = 9e-05
Identities = 28/119 (23%), Positives = 47/119 (39%)
Frame = -3
Query: 532 IIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXXLDEK 353
++ Y + + E + + R+ A L L+ DP RL N L K
Sbjct: 32 VMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGILPSK 91
Query: 352 QMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 176
D + RRL + K +++ + A LI Q H+RV V+ P+++V
Sbjct: 92 SKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPAYLV 150
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 29.5 bits (63), Expect = 0.38
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +2
Query: 395 SIAFKQSLRILLLECQQFTGSLTDASERVLDAPHFTLVAETIL---SDDLQLPDQDAPSR 565
SI F+ S RIL Q T LT S + HF ++ TIL + ++L Q PS
Sbjct: 18 SIFFQGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQSTILFLSRESVRLAMQRIPSE 77
Query: 566 TDV 574
+
Sbjct: 78 NAI 80
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 28.7 bits (61), Expect = 0.67
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +1
Query: 280 TPESEDGAPRSPQSSNRAHNPVSSVSHQALRPXPDDVVEHCLQTIS*DPSPRVSTVHG 453
+PE D +P +N P + +A++P P + H QT P P V T HG
Sbjct: 393 SPEGYDNNRTNPTVNNLPSYPTNLARPKAIKPMPTSI--HG-QTSPLSPIPPVHTTHG 447
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -3
Query: 349 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 218
+++D L + +E FL++ TQ+ +A I + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 26.2 bits (55), Expect = 3.5
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +2
Query: 293 KTALQEVLNLQTEHI-IQFHLFLIKHSDPXQTT**SIAFKQSLRILLLECQQFTGSLTDA 469
KT++ E+ N H+ +F ++K + Q QSL E FT SL
Sbjct: 187 KTSILEICNEMYVHLRTRFECRVMKKKNRTQWINIDEHLSQSLHATDTETHTFTDSLVVL 246
Query: 470 SERVLDAPHFTLVAETILSDD 532
+E V+D T +++ +L D
Sbjct: 247 NEVVIDRGPNTAMSDIMLYVD 267
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 295 DGAPRSPQSSNRAHNPVSSVSHQALRP 375
DGA S Q+ AHNP +SVS + +RP
Sbjct: 90 DGA--SSQNDAFAHNPSTSVSVELVRP 114
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 6.2
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -2
Query: 260 VNPSCPHLDQTEAYSCPQAGGEHSFVHRPPGLRQAH*LLSEVAVRRRPARSRQEEEPA 87
V+ + P +++ + P GG HS + RP R + LLS A + + E+P+
Sbjct: 113 VSVNAPIVNEV-SLQAPMKGGSHSSIVRPQAKRSSSRLLSTDAFSQFISSFSPPEKPS 169
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 25.0 bits (52), Expect = 8.2
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -2
Query: 287 SGVQGWSCEVNPSCP 243
+G++GWS EV+P+ P
Sbjct: 385 AGLKGWSTEVDPNFP 399
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.0 bits (52), Expect = 8.2
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 280 TPESEDGAPR--SPQSSNRAHNPVSSVSHQALRPXPDDVVEHCLQTIS*DPSPRVSTVH 450
T +DG R SP +++ +P+SS S+ + DD E + + P P V+
Sbjct: 7 TGSDDDGGDRESSPVMLSQSFDPMSSSSNSSSEENSDDDYEKTISSKKRHPRPNSKGVN 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,887,105
Number of Sequences: 5004
Number of extensions: 36524
Number of successful extensions: 139
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -