Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_C07
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0147 - 1722947-1723168,1723268-1723464,1723654-1723690,172...    29   2.6  
10_06_0012 - 9586478-9588880                                           29   3.4  
01_01_0539 + 3952039-3952219,3952295-3952984,3953115-3953191,395...    28   6.0  

>10_01_0147 -
           1722947-1723168,1723268-1723464,1723654-1723690,
           1724688-1725584
          Length = 450

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
 Frame = -2

Query: 337 VCLRETPINTVTTLQLKISS--ITSRIIGDICRILFIHQHHNSLQHQCS 197
           V L+ +P     TL+L+ S+  I+ RIIG++  I F  +H N+++  CS
Sbjct: 360 VFLQNSPRLQKLTLKLEKSNMRISRRIIGELTEISFTCEHLNTVEVICS 408


>10_06_0012 - 9586478-9588880
          Length = 800

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = +2

Query: 227 LMDKQNSTDVTNYPGSYTADFELERCYGIYGCFSKAYPWTEHRPDNYFPMTPESMGVIFP 406
           L+ ++NS D     G Y+ +F++     +    +  Y  T     ++F + PE +G   P
Sbjct: 176 LVSRKNSIDQA--AGLYSVEFDINGTGHLLWNSTVVYWSTGDWNGHFFGLAPEMIGATIP 233

Query: 407 TFTRRNRKIPVMLHADST-DHLKNANLNPRG 496
            FT  N    V L    T + + +A ++  G
Sbjct: 234 NFTYVNNDREVYLSYTLTKEKITHAGIDVNG 264


>01_01_0539 +
           3952039-3952219,3952295-3952984,3953115-3953191,
           3953356-3953931
          Length = 507

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 238 FIHQHHNSLQHQCSAGPVIHYESL 167
           + H HH+ LQH  +A  ++H+ ++
Sbjct: 380 YYHHHHHHLQHHPAAAALVHHRAV 403


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,430,375
Number of Sequences: 37544
Number of extensions: 377300
Number of successful extensions: 815
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)