Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_C07
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49913-2|CAA90143.1|  660|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AC087078-5|AAK66024.2|  191|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical p...    27   9.4  
AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical...    27   9.4  

>Z49913-2|CAA90143.1|  660|Caenorhabditis elegans Hypothetical
           protein ZK938.3 protein.
          Length = 660

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 669 YISHGLTIRRLRSTGANLRMTTSCIGHFLPSLEVHLPCSESKA 541
           YISH  T   +  T     ++ + IGH    LEV   C E KA
Sbjct: 182 YISHSFTQEDVAITSTWRMISQAAIGHHEHHLEVKRACQEQKA 224


>AC087078-5|AAK66024.2|  191|Caenorhabditis elegans Hypothetical
           protein Y34F4.5 protein.
          Length = 191

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = -3

Query: 252 SVEFCLSISTIIVCSINVALVR 187
           S +  L I+TIIVCSIN+AL R
Sbjct: 136 SYQSLLLITTIIVCSINIALSR 157


>Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical
           protein C24H11.7 protein.
          Length = 1820

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = -2

Query: 313 NTVTTLQLKISSITSRIIGDICRILFIHQHHNSLQHQCSAGPVIHYESLYAFTYA 149
           NT   + L++   T R+ G+   I  + QH +    + +  P  H ++ +  +YA
Sbjct: 735 NTRLDVALRMFLETFRLPGESAEIALVMQHFSEEWFRANNEPFFHVDAAFTLSYA 789


>AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical
           protein C24H11.7 protein.
          Length = 1820

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = -2

Query: 313 NTVTTLQLKISSITSRIIGDICRILFIHQHHNSLQHQCSAGPVIHYESLYAFTYA 149
           NT   + L++   T R+ G+   I  + QH +    + +  P  H ++ +  +YA
Sbjct: 735 NTRLDVALRMFLETFRLPGESAEIALVMQHFSEEWFRANNEPFFHVDAAFTLSYA 789


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,916,426
Number of Sequences: 27780
Number of extensions: 336062
Number of successful extensions: 765
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)