Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_C07
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   8.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   8.2  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
 Frame = +2

Query: 557 HGKCTSRLGRKCPMQLVVIRRLAPVDLN---RLMVRPW 661
           H  C  R GRK       IRR  PV  N   R +  PW
Sbjct: 428 HCYCPVRFGRKADPNGDYIRRYLPVLKNFPTRYIHEPW 465


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 409 CWEYYAHGFRSHW 371
           CWE  ++G R +W
Sbjct: 828 CWEVMSYGERPYW 840


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 566 CTSRLGRKCPMQLVVIR 616
           C + +GRK PM  VV R
Sbjct: 383 CVNYVGRKRPMHNVVYR 399


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 566 CTSRLGRKCPMQLVVIR 616
           C + +GRK PM  VV R
Sbjct: 352 CVNYVGRKRPMHNVVYR 368


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 566 CTSRLGRKCPMQLVVIR 616
           C + +GRK PM  VV R
Sbjct: 403 CVNYVGRKRPMHNVVYR 419


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 566 CTSRLGRKCPMQLVVIR 616
           C + +GRK PM  VV R
Sbjct: 352 CVNYVGRKRPMHNVVYR 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,594
Number of Sequences: 438
Number of extensions: 4271
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)