Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_C06
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    28   0.87 
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    26   3.5  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   4.6  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.1  
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p...    25   6.1  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   8.1  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    25   8.1  

>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = +3

Query: 66  GHGATLTKTHIPWFGDKMTAAGKVNLFHNNNHDFSAKAFATKNMPNI 206
           GH   +    +PWFG ++ A+G +  F+     + ++ ++ +N  N+
Sbjct: 489 GHEKAIADIEVPWFGKQLHASGAL-AFYFWRSVYLSELYSLRNRTNV 534


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 212 LRNIWHVFSGECFGT--EIVVVVMEEIYFTGSRHFV 111
           +  IW V SG+C  T  E + V +  + FT +R ++
Sbjct: 203 MARIWDVLSGQCLKTLVEPINVPLSNLQFTENRKYL 238


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 69   HGATLTKTHIPWFGDKMTAAGKV 137
            HG T+   HI   GD MT  G+V
Sbjct: 1292 HGLTVDPRHIMLLGDVMTCKGEV 1314


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 234 GAGVDYMFKDKIGASATAAHTDVFNRNDYSLGG 332
           G+G   +F DK G    A     F++ DYS  G
Sbjct: 61  GSGASIIFADKAGLKFEAERYGKFDQIDYSTKG 93


>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 147 HNNNHDFSAKAFATKNMPNIPQVPNFNTVGAGVDYMFKDK 266
           H N    SA  ++  ++   PQ   F+T G+   + F DK
Sbjct: 244 HRNQAGNSADVYSVNSIAFHPQYGTFSTAGSDGTFSFWDK 283


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 558  KLKVYYNLCTKTYNSIXILKLIFYKSQL 475
            KL   Y L T+++  +  L+L+FYK  +
Sbjct: 1203 KLYERYYLITRSFIGVAALQLLFYKKNI 1230


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 221 VRNLRNIWHVFSGEC 177
           + N R++WH F G C
Sbjct: 126 IHNYRDLWHSFKGMC 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,069
Number of Sequences: 5004
Number of extensions: 44953
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)