Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_C06
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical...    29   1.8  
AL132865-4|CAB60604.1|  458|Caenorhabditis elegans Hypothetical ...    28   4.2  
AL110485-29|CAB60376.3|  732|Caenorhabditis elegans Hypothetical...    28   5.6  
Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical
           protein K04F10.7 protein.
          Length = 293

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 167 QCQSIRH*KHAKYSSSSELQHCRCRSGLHVQR*NWC 274
           QCQ  +    AKY      Q+C+  +  H Q+  WC
Sbjct: 25  QCQKCQK-NEAKYGKPGTCQYCKLNAAFHDQKCVWC 59


>AL132865-4|CAB60604.1|  458|Caenorhabditis elegans Hypothetical
           protein Y62E10A.6 protein.
          Length = 458

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -2

Query: 413 LNEWCIELLPTGVEVXRRGGRLEKIQFSAQRVV-VAVKDIGVCGGRRCTNFIFEHV 249
           + +W  +L  + ++       L K++   +R+  V VK+IG+  G R  +FIF  +
Sbjct: 235 IKDWDSKLEISEIDAKNLTESLPKLERKKKRLTEVLVKNIGIANGLRQCHFIFHRI 290


>AL110485-29|CAB60376.3|  732|Caenorhabditis elegans Hypothetical
           protein Y46G5A.10 protein.
          Length = 732

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 235 VPEWTTCSKIKL-VHLRPPHTPMSLT 309
           V E   C K+K+ V+ +PPH P+ +T
Sbjct: 258 VREKKNCDKLKINVYFKPPHPPVEIT 283


>Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical
           protein F38C2.5 protein.
          Length = 186

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 198 PNIPQVPNFNTVGAGVDYMFKDKIGASATAAHTD 299
           P +PQ  ++    +G+   F D  GASA+++ TD
Sbjct: 151 PLMPQFSSWFAPSSGLSREFLDNFGASASSSSTD 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,668,190
Number of Sequences: 27780
Number of extensions: 265000
Number of successful extensions: 657
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)