Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_C05
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.47
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po... 29 0.82
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 27 1.9
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 27 1.9
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 26 4.4
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 26 4.4
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1... 26 5.8
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 26 5.8
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 25 7.7
>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 105
Score = 29.5 bits (63), Expect = 0.47
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 344 FITVSNVYFISQFEINSFNRSYFLI*VSEYCFSYVV 237
F+ S IS ++N R Y+ I YCF Y++
Sbjct: 4 FVFESLCAMISTLKVNKIERGYWFIQCLRYCFIYII 39
>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 28.7 bits (61), Expect = 0.82
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 303 LKLANKVYIANGNELNDQFAVVSRDVFNSE-VQNLNFGKNEEAANIINTWVEDHTNKRIX 479
+ NK+Y G ++V +++ N E + EAA + W + H+N I
Sbjct: 1 MSTTNKIYFIAGGNRGIGLSLV-KELSNREGTVVFASARKPEAATELQEWSKSHSNVHII 59
Query: 480 NLVDPSSLDSSTQ 518
L D SSL+S+ +
Sbjct: 60 KL-DISSLESANE 71
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 27.5 bits (58), Expect = 1.9
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Frame = +3
Query: 66 NGNDQFTARMFNEVVKKNPDKSVILSAFSVMIPLAQLAIASTGESHDELLKAI------- 224
N N Q A + + KN S++ S + L IAS +H+ + I
Sbjct: 59 NANIQLLALTLTDAIVKNCKTSIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEW 118
Query: 225 -DFPNDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGNEL 347
+ + ++ D+ +K+R + VDL+ K NEL
Sbjct: 119 AEIMKKDPNMSLMQDICEKIRKLDIVDLRAPKKPEKEAMNEL 160
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 1.9
Identities = 21/82 (25%), Positives = 42/82 (51%)
Frame = +3
Query: 345 LNDQFAVVSRDVFNSEVQNLNFGKNEEAANIINTWVEDHTNKRIXNLVDPSSLDSSTQCV 524
L D VV R V +E +++ G N + + + +T+K++ LV SS+ + + +
Sbjct: 322 LGDNSLVVIRAVDLAEQIHVS-GINSFESKYLTSTGPKNTSKQLQGLVQFSSVSPNGELL 380
Query: 525 LVNAIYFKGSWKDXFDKELTQD 590
L+++ F G + +LT+D
Sbjct: 381 LMSSSSFNGHSVSVQEYDLTKD 402
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 395 HFRIKHISGHNSKLII*FI 339
HF + H+ GH SKL F+
Sbjct: 72 HFHVSHVPGHASKLYFAFL 90
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -1
Query: 430 AASSFLPKFKFCTSELNTSLDTTAN*SFNSLPLAMYTLLASLRSTPLIDLT 278
A +FL F FC + +N SLD + +YTL+ L P + +T
Sbjct: 289 ARLNFL-SFSFCVNPMNQSLDCNTTPHRRNASSIIYTLMYYLIIAPTLLIT 338
>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 455
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/37 (24%), Positives = 19/37 (51%)
Frame = -3
Query: 548 LKVNCIYENTLCATVQRTRIHQIXDTFIGVVFNPSIN 438
+++ + +T+ V R + DTF+G++F N
Sbjct: 189 IRIEAVINDTVGTLVTRAYTSKESDTFMGIIFGTGTN 225
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +3
Query: 234 NDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNL 404
ND + +A +DL QK+ L N ++ ++ D+F+ R + + NL
Sbjct: 546 NDYIAQAGLSDLLQKIADTTDDKQALKNYLHSWKWDQQIDKFSTFIRKTLSETIDNL 602
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 7.7
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +3
Query: 333 NGNELNDQFAVVSRDVFNSEVQNLNFGKNE----EAANIINTWVEDHTNKR 473
NG ++ D VV VF + QN KNE EA+ T V D T +
Sbjct: 279 NGKQVGDLTLVVKSAVFREDKQNDENEKNENEPIEASESAPTNVSDSTEPK 329
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,764
Number of Sequences: 5004
Number of extensions: 53612
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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