Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_C02
(396 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce... 139 2e-34
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 27 1.4
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 27 1.4
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 26 2.4
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 25 3.2
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 25 3.2
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 25 4.3
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 25 4.3
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 25 5.6
SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces po... 24 9.8
>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 83
Score = 139 bits (336), Expect = 2e-34
Identities = 60/82 (73%), Positives = 70/82 (85%)
Frame = +2
Query: 14 MPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 193
M LA+DLL+PS SE RKHKLK+LV P S+FMDVKCPGC+ ITTVFSHAQ VV+C C+
Sbjct: 1 MVLAVDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCA 60
Query: 194 TILCQPTGGRARLTEGCSFRRK 259
++LCQPTGG+ARL EGCSFRRK
Sbjct: 61 SVLCQPTGGKARLMEGCSFRRK 82
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 26.6 bits (56), Expect = 1.4
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -3
Query: 97 WMWYQSLQLMFPPLRRGGRVQ 35
W+W+ +L L+FP + +V+
Sbjct: 459 WLWFMALMLLFPSYQNPNKVE 479
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 26.6 bits (56), Expect = 1.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 100 VWMWYQSLQLMFPPLRR 50
VWMW+ L L+FP ++
Sbjct: 459 VWMWFMILMLLFPQYQK 475
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 2.4
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 189 VPQSFASPLVAELD*RKDVHLEENSIKSWRESRINFKIMFVS 314
+P+S P + L + + +K WRES++ F + F+S
Sbjct: 454 LPRSLPRPFLLALSILLSI-ISSFLVKHWRESKVPFLVYFLS 494
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 25.4 bits (53), Expect = 3.2
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +3
Query: 147 RYLATH---RGLLYAQDVPQSFASPLVAELD*RKDVHLEENSIKSWRESRINF 296
RY H + L Y QD S +P V ++ V LEE S+K W +F
Sbjct: 609 RYQIAHELEQELSYLQDYVFSLGNPYVEYC--KQHVKLEEESLKIWHTLESDF 659
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.4 bits (53), Expect = 3.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 370 CLDGSTFKEFVKRHSFILLETNIILKLIRLSL 275
C DG+ F R +LLE I++K R +L
Sbjct: 667 CKDGTYFFRTTSRKQILLLEIGILIKPERYNL 698
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.0 bits (52), Expect = 4.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 252 LNEHPSVNLARPPVGWQRI 196
LNEH ++ LARP + RI
Sbjct: 425 LNEHETIELARPVLAQNRI 443
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 25.0 bits (52), Expect = 4.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 172 NPLCVAKYRSYFVATGTF 119
+P + KY+ YFV T TF
Sbjct: 23 HPCSILKYKVYFVTTDTF 40
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 24.6 bits (51), Expect = 5.6
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 181 AYNNPLCV-AKYRSYFVATGTFDIHEIRVWMWYQSL 77
++ NP + AK+RS+ T D ++R W+ + S+
Sbjct: 2 SFQNPSYINAKHRSFLQPKDTQDSQDLRNWVSHSSV 37
>SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 163
Score = 23.8 bits (49), Expect = 9.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 219 PPVGWQRIVEHPAHTTTL 166
PPVGW+ IVE ++ L
Sbjct: 102 PPVGWEPIVEESPNSQHL 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,747,400
Number of Sequences: 5004
Number of extensions: 33846
Number of successful extensions: 63
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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