Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_C01
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 71 1e-13
SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1 |... 29 0.34
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 4.2
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 25 5.6
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 25 5.6
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 7.4
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 25 7.4
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 7.4
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po... 25 9.8
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 25 9.8
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 25 9.8
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 70.9 bits (166), Expect = 1e-13
Identities = 36/79 (45%), Positives = 47/79 (59%)
Frame = +1
Query: 19 YVDDDGIPTEVYPMNPNGSPDGIAGVRSRDGRHIAMMPHPERCTMRWQCPTDAPKPLVSS 198
YV++ T YP NPNGS D IAGVRS GR +AMMPHPER ++ ++ P +
Sbjct: 1246 YVNNYNERTSRYPFNPNGSRDAIAGVRSPCGRFLAMMPHPERVVLK---VANSYYPHSKA 1302
Query: 199 DPTCQYSPWLRLFQNAYLW 255
+ PW+RLFQ+A W
Sbjct: 1303 SEWGVHGPWIRLFQSARKW 1321
>SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 190
Score = 29.5 bits (63), Expect = 0.34
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 260 EAQRYAFWKSRSQGEYWQVGSEETRGFGASVGHCQRIVQR 141
+A + W+ +S GE G + G+SV CQR++++
Sbjct: 72 DASQRVIWRDKSLGEDDFEGMRSEKASGSSVQGCQRVLEK 111
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -2
Query: 180 RCIRGALPTHSATLGMWHHGDMPTITRSHSGDTIWTSVRIHRV 52
+C+RG ++S+ + + +P ITR+ S + ++ RV
Sbjct: 602 KCVRGGFFSYSSKMYKYDRVSIPVITRASSSRNLLITMNCLRV 644
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 224 GFDSSKTHISGLRTIKIIPYNKLILFRFIKSKL 322
G DSS T +G R K+ K+ILF FI L
Sbjct: 398 GNDSSATTSAGSRYFKVRYGTKIILFIFIAFNL 430
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = -2
Query: 192 NEGFRCIRGALPTHSATLGMWHHGDMPTITRSHSGDTIWTSVRIHRVHFRRYSVIVHVL 16
+EG R + L ++ + + H D+ + R H ++++ + H H + ++VH+L
Sbjct: 591 DEGARLLTDKLISYCYSSAL-HIVDLLVLLRMHKFLSVYSFMDYHSCHAASFIILVHLL 648
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 87 DTIWTSVRIHRVHFRRYSVIVHVLHRDLS 1
++ WT V +++ H R+Y + L DLS
Sbjct: 1413 ESCWTGVLLNKFHSRQYLFLSRDLVEDLS 1441
>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 568
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 140 SVALCVGNAPRMHRNPSFPPTPLANIPLGFDSS 238
S L GN+ SF PTP ++ PL F +S
Sbjct: 197 SSTLSHGNSVEADEINSFNPTPFSSSPLHFTNS 229
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 7.4
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -2
Query: 315 DLMKRNNMSLL*GIILMVRSPEICVLEESKPRGILASGVGGNEGFRCIRGA 163
DL K +LL G +L + + C+ E+ + S GG E +C+R A
Sbjct: 553 DLEKNITEALLTGDVLS--AVKACLEEKKISEALFLSTFGGKECRKCVRDA 601
>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 596
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -2
Query: 276 IILMVRSPEICVLEESKPRGILASGVGGNEGFRCIRGALP 157
++ ++ + EI + + KP + + G +E RGALP
Sbjct: 237 VVAILEALEILAISDYKPEQTVIASFGFDEEVSGYRGALP 276
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 24.6 bits (51), Expect = 9.8
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +2
Query: 377 EWCSSFICCVYRFLSS 424
EW F+CC +F+ S
Sbjct: 45 EWSHDFLCCCNKFIES 60
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 342 SN*YSILSLDLMKRNNMSLL*GIILMVRSPEICVLEESKPR 220
SN YS++SLD N + I+L +SP ++SK +
Sbjct: 789 SNVYSLISLDPPLSTNQGSMGDIVLETKSPIRVEKKKSKKK 829
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,971
Number of Sequences: 5004
Number of extensions: 55189
Number of successful extensions: 139
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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