Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_C01
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1608 - 38612754-38616947,38617030-38617095                       97   8e-21
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22...    95   3e-20
06_03_0290 - 19193707-19193752,19193822-19194090                       31   0.81 
01_03_0294 - 14745886-14745944,14745981-14746036,14746401-147464...    29   3.3  
02_01_0441 - 3191522-3191887,3193787-3193957                           28   5.7  
08_02_1266 - 25721277-25721354,25721429-25722236,25724215-25724567     27   7.5  
04_03_0870 + 20431215-20431419,20432559-20433439,20433829-204339...    27   7.5  
10_08_0200 + 15727759-15727995,15728153-15728566                       27   10.0 
01_04_0112 - 16127785-16128279,16128883-16128986,16129304-16129454     27   10.0 

>01_06_1608 - 38612754-38616947,38617030-38617095
          Length = 1419

 Score = 97.1 bits (231), Expect = 8e-21
 Identities = 48/81 (59%), Positives = 53/81 (65%)
 Frame = +1

Query: 13   MQYVDDDGIPTEVYPMNPNGSPDGIAGVRSRDGRHIAMMPHPERCTMRWQCPTDAPKPLV 192
            ++Y DD    TEVYP NPNGSP GIA + S DGRH+AMMPHPERC M WQ P   PK   
Sbjct: 1340 VRYCDDANNITEVYPFNPNGSPLGIAALCSPDGRHLAMMPHPERCFMMWQYPW-YPKEWQ 1398

Query: 193  SSDPTCQYSPWLRLFQNAYLW 255
                 C  SPWLR+FQNA  W
Sbjct: 1399 LE--KCGPSPWLRMFQNAREW 1417


>05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-225084,
            225296-225356,225666-226918
          Length = 1891

 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 49/80 (61%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
 Frame = +1

Query: 13   MQYVDDDGIPTEVYPMNPNGSPDGIAGVRSRDGRHIAMMPHPERCTMRWQCPTDAPK--P 186
            ++Y DD    TEVYP NPNGSP GIA + S DGRH+AMMPHPERC M WQ P  +PK   
Sbjct: 1336 VRYCDDANNITEVYPFNPNGSPLGIAALCSPDGRHLAMMPHPERCFMMWQYPW-SPKDWQ 1394

Query: 187  LVSSDPTCQYSPWLRLFQNA 246
            L  S P    SPWLR+FQNA
Sbjct: 1395 LEKSGP----SPWLRMFQNA 1410


>06_03_0290 - 19193707-19193752,19193822-19194090
          Length = 104

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 149 VQRSGCGIMAICRPSRDRTPAIPSGLPLGFIGYTSVGIPSSSTYCIA 9
           ++ +G G      PS   TPA   GLP G+ G+  VG  SSS+   A
Sbjct: 13  IEAAGRGRRVAASPSPGGTPAASRGLP-GWPGFCGVGCGSSSSSSFA 58


>01_03_0294 -
           14745886-14745944,14745981-14746036,14746401-14746452,
           14746922-14747303
          Length = 182

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 79  DGIAGVRSRDGRHIAM-MPHPERCTMRWQCPTDAPKPLVSSDPTCQYSP 222
           DG  GV  +D    A  +   +    RW CP DA +P V + P   + P
Sbjct: 79  DGFGGVTVKDYFAAARAVSSDDGGPPRWFCPVDAGRPAVDNAPLLLFLP 127


>02_01_0441 - 3191522-3191887,3193787-3193957
          Length = 178

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 273 ILMVRSPEICVLEESKPRGILASGVGGNEGFRCIR 169
           ++M+ S E+C+L ES  + I+         F C++
Sbjct: 123 VMMLDSDEVCILAESGRKQIILDAFADGSSFICLK 157


>08_02_1266 - 25721277-25721354,25721429-25722236,25724215-25724567
          Length = 412

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 88  AGVRSRDGRHIAMMPHPERCTMRWQCPTDAPKPLVSSDPTC 210
           +G  SR G  I  +   E C  +W+   D P P+ +  P C
Sbjct: 328 SGGESRAGHEILTLGDGEDC-WKWKATIDPPYPINARTPIC 367


>04_03_0870 +
           20431215-20431419,20432559-20433439,20433829-20433990,
           20434742-20435001,20435110-20435200,20435487-20435675
          Length = 595

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 180 RCIRGALPTHSATLGMWHHGDMPTITRSHSGDTIWTS 70
           R  R A P HSA  GMW   D   +T     + + TS
Sbjct: 229 RWTRAAQPLHSAPTGMWECPDFYPVTADGRREGVDTS 265


>10_08_0200 + 15727759-15727995,15728153-15728566
          Length = 216

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 149 LCVGNAPRMHRNPSFPPTPLANIPLG 226
           L  G++PR H +P  PP  L    LG
Sbjct: 188 LSPGSSPRAHEDPPLPPLSLTGWSLG 213


>01_04_0112 - 16127785-16128279,16128883-16128986,16129304-16129454
          Length = 249

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 198 RPHLPIFPLASTLP 239
           RPHLP+ PLAS+ P
Sbjct: 188 RPHLPVSPLASSSP 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,540,133
Number of Sequences: 37544
Number of extensions: 362542
Number of successful extensions: 1139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)