Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_C01
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical pr...    80   1e-15
U97005-11|AAB52288.1|  891|Caenorhabditis elegans Hypothetical p...    31   0.42 
U21308-10|AAN65281.1|  329|Caenorhabditis elegans Roller: helica...    30   1.3  
M25477-1|AAA27991.1|  329|Caenorhabditis elegans collagen protein.     30   1.3  
Z70271-3|CAA94234.1|  358|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U97405-1|AAB53007.1|  327|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z69792-4|CAA93665.1|  212|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z49128-5|CAA88955.1|  676|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U55366-3|AAY86188.1|  118|Caenorhabditis elegans Hypothetical pr...    27   6.8  

>Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical protein
            F10F2.2 protein.
          Length = 1343

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 39/94 (41%), Positives = 54/94 (57%), Gaps = 9/94 (9%)
 Frame = +1

Query: 1    GQVAMQYVDDDGIPTE-------VYPMNPNGSPDGIAGVRSRDGRHIAMMPHPERCTMRW 159
            GQV +++ DD G+           YP NPNGS D +A + SRDGRH+AMMPH +R  + W
Sbjct: 1248 GQVCIRFCDDRGMTGADHGSVKLPYPWNPNGSIDDVAAICSRDGRHLAMMPHADRSFLTW 1307

Query: 160  QCPTDAPKPLVS--SDPTCQYSPWLRLFQNAYLW 255
            Q    +  P  +     T   SPW+++F+NAY W
Sbjct: 1308 QWAESSEVPWNARFDQKTVALSPWIKMFRNAYNW 1341


>U97005-11|AAB52288.1|  891|Caenorhabditis elegans Hypothetical
           protein F19F10.10 protein.
          Length = 891

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = -2

Query: 291 SLL*GIILMVRSPEICVLEESKPRGI 214
           SL+ GI L ++ P  CVLEE KPR I
Sbjct: 607 SLVSGIPLGIQEPSECVLEEEKPRDI 632


>U21308-10|AAN65281.1|  329|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 8, isoform a
           protein.
          Length = 329

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
 Frame = +1

Query: 55  PMNPNGSP-----DGIAGVRSRDGRHIAMMPHP--ERCTMRWQCPTDAPKPLVSSDP 204
           P  P G P     DG  G   ++GR   ++P P  E C +   CPT AP P+ +  P
Sbjct: 146 PPGPEGPPGNDGKDGRNGNDGKNGRDAEVLPAPASEPCII---CPTGAPGPMGAMGP 199


>M25477-1|AAA27991.1|  329|Caenorhabditis elegans collagen protein.
          Length = 329

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
 Frame = +1

Query: 55  PMNPNGSP-----DGIAGVRSRDGRHIAMMPHP--ERCTMRWQCPTDAPKPLVSSDP 204
           P  P G P     DG  G   ++GR   ++P P  E C +   CPT AP P+ +  P
Sbjct: 146 PPGPEGPPGNDGKDGRNGNDGKNGRDAEVLPAPASEPCII---CPTGAPGPMGAMGP 199


>Z70271-3|CAA94234.1|  358|Caenorhabditis elegans Hypothetical
           protein W08D2.6 protein.
          Length = 358

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = +1

Query: 31  DGIPTEVYPMNPNG-----SPDGIAGVRSRDGRHIAMMPHPE 141
           DG P +   M PNG      PDG  G +  DGR +   P P+
Sbjct: 221 DGDPGKPGEMGPNGFQGKVGPDGFPGEKGGDGRRLIGRPGPK 262


>Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical
           protein C47E8.3 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 331 ILIGDQYIYQFVSPLRMVFVIYLLCLQIFIEYF 429
           I++G  YI   V P+ M + +YL    IF+ YF
Sbjct: 73  IIMGINYIAVMVVPVYMDYYLYLPLWHIFLSYF 105


>U97405-1|AAB53007.1|  327|Caenorhabditis elegans Hypothetical
           protein T09B4.5a protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -1

Query: 553 CRFLLG*N*NAHKCLIYNQILILVSVIFSYIY 458
           C FL   N  AH    YN I  L+S IF+YI+
Sbjct: 194 CAFLT--NAKAHAISAYNWIAALLSTIFAYIH 223


>Z69792-4|CAA93665.1|  212|Caenorhabditis elegans Hypothetical
           protein F40E10.2 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 167 PRMH-RNPSFPPTPLANIPLGFDSSKTH 247
           PR++   P+ PP  L N    FDS KTH
Sbjct: 132 PRLNIAMPTIPPQSLFNYSTAFDSLKTH 159


>Z49128-5|CAA88955.1|  676|Caenorhabditis elegans Hypothetical
           protein M03C11.5 protein.
          Length = 676

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +3

Query: 6   SRDAVRGR*RNTDGSVPDES*RKSRWYRRSAIS*WSAYRHDATSRALHYALAMPHG 173
           +RD V      T G +PDE   ++  Y  +  +  S Y  DAT   LH    +P G
Sbjct: 435 ARDRVLMGPARTGGRIPDEEANRNTAYHEAGHTLVSLYTKDAT--PLHKVTIIPRG 488


>U55366-3|AAY86188.1|  118|Caenorhabditis elegans Hypothetical
           protein F41F3.8 protein.
          Length = 118

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 128 CHIPSVALCVGNAPRMH-RNPSFPPTPLANIPL 223
           C  PS++LC G APR     P F P P  + PL
Sbjct: 26  CGGPSLSLCGGCAPRPRVAAPPFAPPPPPSPPL 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,384,125
Number of Sequences: 27780
Number of extensions: 312042
Number of successful extensions: 911
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)