Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_C01
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   0.89 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.3  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
 Frame = +1

Query: 52  YPMNPNGSPDGIAGVRSR-------DGRHI--AMMPHPERCTMRWQCP 168
           YP+   GSPDG   V S+       D RHI  A +   E    R+  P
Sbjct: 398 YPLELKGSPDGFESVTSQYKNIREDDARHIPHASVTDSENTVPRYLSP 445


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 219 GILASGVGGNEGFRCI 172
           G+L  G+ GN G  C+
Sbjct: 318 GVLFLGLVGNSGIACV 333


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -1

Query: 508 IYNQILILVSVIFS 467
           +YN +LIL+S +++
Sbjct: 679 LYNALLILISTVYA 692


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -1

Query: 508 IYNQILILVSVIFS 467
           +YN +LIL+S +++
Sbjct: 769 LYNALLILISTVYA 782


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,189
Number of Sequences: 438
Number of extensions: 3832
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)