Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_B23
         (171 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    26   0.76 
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   1.8  
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces...    23   5.4  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    23   7.1  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    22   9.4  

>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 159 GGSPTIDP-STWTLPSGSRVNVILPLMFSPT 70
           GGS    P S + +PS S VN+  PL+ SP+
Sbjct: 395 GGSMPKGPNSIYKIPSASMVNLSSPLVTSPS 425


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 145 DRSFYVDLAVRQPSERNIASDVLP 74
           D S Y+  ++  PSE ++AS ++P
Sbjct: 213 DASSYITFSIPVPSEFSLASHIIP 236


>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 130 VDLAVRQPSERNIAS-DVLPDQMGDSPCRLRAFMMAAHNDSN 8
           VD+ + Q  ++   S D +P +   SPC+   F M   +D N
Sbjct: 168 VDIRLFQKIQKPEDSLDAVPKEHSFSPCQHEEFRMHYEDDKN 209


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +2

Query: 62  AHLVGENIR---GNITFTRLPDGKVHVEGSI 145
           A L GE +    G +   +L  GK+ VEGS+
Sbjct: 749 AELKGEGVLLCGGAVAVRKLSGGKISVEGSL 779


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = -1

Query: 129  WTLPSGSRVNVILPLMFSPTRWAIARVGCER 37
            W LP  +    I PL FSP         C R
Sbjct: 1678 WLLPQQNEKCSIYPLAFSPRFTYYRHTKCHR 1708


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 657,269
Number of Sequences: 5004
Number of extensions: 9362
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 37
effective length of database: 2,177,330
effective search space used: 41369270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)