Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_B23
(171 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 32 0.057
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 29 0.53
03_02_0335 - 7579319-7579580,7580384-7581074,7581183-7581240 29 0.53
07_01_0297 - 2156960-2157736 27 1.6
02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236 27 2.1
03_05_0898 + 28610123-28610203,28611190-28611271,28611666-286117... 27 2.8
02_05_0364 + 28304743-28304814,28305021-28305197,28307309-283074... 27 2.8
07_03_0408 - 17798033-17798181,17798349-17798616,17798707-177987... 26 3.8
12_02_0913 + 24246217-24247557 26 5.0
12_02_0434 + 19025539-19026027,19026474-19027553 25 6.6
01_06_1606 + 38587709-38588002 25 6.6
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23... 25 8.7
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653... 25 8.7
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 32.3 bits (70), Expect = 0.057
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 53 RAIAHLVG-ENIRGNITFTRLPDGKVHVEGSIVGLPPG 163
+A+A L E ++G I F++ DG V GS+ GL PG
Sbjct: 3 KAVAVLASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPG 40
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 29.1 bits (62), Expect = 0.53
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 77 ENIRGNITFTRLPDGKVHVEGSIVGLPPG 163
E ++G I F + DG V GS+ GL PG
Sbjct: 130 EIVKGTIHFVQEGDGPTTVTGSVSGLKPG 158
>03_02_0335 - 7579319-7579580,7580384-7581074,7581183-7581240
Length = 336
Score = 29.1 bits (62), Expect = 0.53
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = -1
Query: 165 WPG-----GSPTIDPSTWTLPSGSRVNVILPLMFSPTRWAIARVGC 43
WPG GS +DP+ + LP G+ V P +S W AR GC
Sbjct: 37 WPGILSNAGSARMDPTGFELPPGAARAVPAPTGWSGRLW--ARTGC 80
>07_01_0297 - 2156960-2157736
Length = 258
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 80 NIRGNITFTRLPDGKVH 130
N+ G IT+ LPDG+VH
Sbjct: 80 NLDGRITYQSLPDGEVH 96
>02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236
Length = 1096
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 9 LLSL*AAIMNARSRHGLSPIWSGRTSEAILRSLG 110
L SL A I+ + HG P W G S + SLG
Sbjct: 292 LSSLTALILQENNLHGGIPSWLGNLSSLVYLSLG 325
>03_05_0898 +
28610123-28610203,28611190-28611271,28611666-28611721,
28612253-28612366,28612484-28612546,28612633-28612752,
28612850-28612950,28613097-28613156,28613243-28613342,
28613421-28613575,28613661-28613756,28614269-28614403,
28614510-28614573,28614648-28614729,28615038-28615213,
28615302-28615378,28615637-28615769,28615939-28616055,
28616394-28616398,28616564-28616684,28616711-28617751
Length = 992
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 32 HERSQPTRAIAHLVGENIRGNITFTRLPDG 121
H+RS PT A +V +N+ N+ F +P G
Sbjct: 386 HQRSMPTSAALDVVAKNL--NLKFFEVPTG 413
>02_05_0364 +
28304743-28304814,28305021-28305197,28307309-28307431,
28307644-28308043,28308129-28308242,28308359-28308454,
28308598-28308791
Length = 391
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +2
Query: 5 AVAVVVSGHHERSQPTRAIAHLVGENIRGNITFTRL----PDGKVHV 133
+ A + G + RAI++ EN+ N RL PDGK+H+
Sbjct: 254 SAATCLKGANAFKMRNRAISNYAFENLMSNQKDVRLPIRTPDGKIHI 300
>07_03_0408 -
17798033-17798181,17798349-17798616,17798707-17798797,
17800458-17800585,17800760-17800891
Length = 255
Score = 26.2 bits (55), Expect = 3.8
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 8 VAVVVSGHHERSQPTRAIAHLVGENIR---GNITFTRLPDGKVHVEGSIV 148
+A +V GHH + + A +VGE++ G +T T L G V + G +V
Sbjct: 26 MAAMVKGHHPADGASSSAAGIVGESLAEPFGRLTTTTL-FGVVPLLGGVV 74
>12_02_0913 + 24246217-24247557
Length = 446
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 89 GNITFTRLPDGKVHVEGSIVGLPPG 163
G +TFTR+ G +H ++GL G
Sbjct: 200 GCVTFTRIVQGALHGASGLIGLGRG 224
>12_02_0434 + 19025539-19026027,19026474-19027553
Length = 522
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 68 LVGENIRGNITFTRLPDGKVHVEGSIVGLPPGHY 169
L+G GN+ RLPDG+ E +I P HY
Sbjct: 200 LIGRGGVGNVYMGRLPDGR---EVAIKHFPEFHY 230
>01_06_1606 + 38587709-38588002
Length = 97
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 126 TLPSGSRVNVILPLMFSPTRW 64
T P+GS+ V P F PTRW
Sbjct: 30 TQPAGSKRKVPEPDTFCPTRW 50
>05_01_0034 -
228939-229028,229117-229230,229309-229430,229827-230056,
230458-230537,230641-230859
Length = 284
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 77 ENIRGNITFTRLPDGKVHVEGSIV 148
E + G + + LPDG VHV S V
Sbjct: 41 ERVIGTLLGSVLPDGTVHVRNSYV 64
>03_02_0870 +
11964135-11964224,11965013-11965175,11965262-11965380,
11965971-11966083,11966179-11966234,11966320-11966417,
11966588-11966725,11966820-11967125,11967208-11967471,
11967587-11967754,11967838-11968056,11968115-11968158,
11968761-11968830,11968949-11969110,11969672-11969779,
11969873-11969910,11970121-11970265,11970800-11970926,
11971037-11971230,11971529-11971659,11972014-11972089,
11972218-11972328,11972465-11972647,11973264-11973407,
11973946-11973969,11974555-11974728,11974808-11975155,
11975232-11975561,11975776-11975961,11976052-11977026,
11977145-11977399
Length = 1852
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 145 DRSFYVDLAVRQPSERNIASDVL 77
D +V++ R PS+RN S VL
Sbjct: 903 DHDLFVEMPGRDPSDRNYLSSVL 925
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,055,369
Number of Sequences: 37544
Number of extensions: 83863
Number of successful extensions: 251
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 14,793,348
effective HSP length: 36
effective length of database: 13,441,764
effective search space used: 268835280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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